PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00035172-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family LBD
Protein Properties Length: 214aa    MW: 23057.8 Da    PI: 5.9184
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00035172-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260116.31.9e-3612109196
            DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq..pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 
                       +C aCk+lrrkC+k+Cv+apyf++++  + +f ++hk+FGasn +kll +lp eer d++++++yeA+ar++dPv+G+v++i++lq+q+++lk
  PSME_00035172-RA  12 SCGACKFLRRKCVKGCVFAPYFCSDEmgAPHFGAIHKVFGASNFSKLLMHLPVEERYDTVATVLYEAQARLQDPVHGCVSHIFALQHQVANLK 104
                       6***********************995569**************************************************************9 PP

            DUF260  92 aelal 96 
                        +la+
  PSME_00035172-RA 105 GKLAV 109
                       99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089121.56311114IPR004883Lateral organ boundaries, LOB
PfamPF031952.6E-3512108IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MASINMGGGG VSCGACKFLR RKCVKGCVFA PYFCSDEMGA PHFGAIHKVF GASNFSKLLM  60
HLPVEERYDT VATVLYEAQA RLQDPVHGCV SHIFALQHQV ANLKGKLAVG YSQLAACSSS  120
NGASQPEYVS GKQSEMPSLI SNSNSSSPYD PQYLNPLGDL QSIPSENVAV NNYDEEAREE  180
EGSWGSFSVC TQGTTNNYRD GDLQDLASAL LRRS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A5e-3421141111LOB family transfactor Ramosa2.1
5ly0_B5e-3421141111LOB family transfactor Ramosa2.1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022873090.12e-54LOB domain-containing protein 17-like
TrEMBLA0A1U8AIH72e-51A0A1U8AIH7_NELNU; LOB domain-containing protein 29
STRINGXP_010262268.13e-52(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42440.18e-50LBD family protein