PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00035226-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family bHLH
Protein Properties Length: 354aa    MW: 37866.3 Da    PI: 11.1357
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00035226-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH14.56.6e-05324349530
                       HHHHHHHHHHHHHHHHHHHHCTSCCC CS
               HLH   5 hnerErrRRdriNsafeeLrellPka 30 
                       h ++Er RR ri +++  L+el+P++
  PSME_00035226-RA 324 HCIAERLRRGRIVERMKALQELVPNS 349
                       889*********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.25E-5317351IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088810.379319354IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.0E-4324349IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MQPSTSLLGT GPVQSVSSVT SCLSSSPEVP SRNNAQPTAA NKQLAATFFF TIRSNEPASS  60
EHGRLPGANV LNAFLVGRSR ENCANLQINT HRLFTMPLLP FGIGGQGLNS QENEGHAGEH  120
MQYSNYDESQ FLASRLRQHP LSGNSSMNQM PNQVSQGINE TNTSPRRSMV LQLSTGNATA  180
SQLLASMGNS PRGTAVMTRS PSTGGSCNGS DGGMLPLPLS LSQGGKSGKM NETRSRDEIE  240
ASFKSANNAR DSNLGGLFPP FPGSPRGVRP PDQNFHPQSG QVPMQGYGRM PQPQHQNPPP  300
TGVGAAPPVR PRVRARRGQA TDPHCIAERL RRGRIVERMK ALQELVPNSN KINT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1150430.0BT115043.1 Picea glauca clone GQ03607_N12 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006857186.21e-35transcription factor bHLH66
RefseqXP_011628047.11e-35transcription factor bHLH66
RefseqXP_020530898.11e-35transcription factor bHLH66
RefseqXP_020530899.11e-35transcription factor bHLH66
TrEMBLU5DE193e-34U5DE19_AMBTC; Uncharacterized protein
STRINGERN186534e-35(Amborella trichopoda)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58010.12e-13LJRHL1-like 3