PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00035318-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family NF-X1
Protein Properties Length: 1209aa    MW: 134252 Da    PI: 8.5005
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00035318-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X121.16.9e-07536554119
          zf-NF-X1   1 CGkHkCqklCHeGpCppCp 19 
                       CG+H C+ +CHeGpC+pC+
  PSME_00035318-RA 536 CGRHNCENICHEGPCDPCK 554
                       ******************8 PP
2zf-NF-X116.51.9e-05761779119
          zf-NF-X1   1 CGkHkCqklCHeGpCppCp 19 
                       CG+H C +lCH G CppC 
  PSME_00035318-RA 761 CGQHVCTELCHSGHCPPCL 779
                       ******************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF578501.01E-5367434No hitNo description
PROSITE profilePS500898.875378430IPR001841Zinc finger, RING-type
CDDcd060081.77E-7463519No hitNo description
SMARTSM004380.043481499IPR000967Zinc finger, NF-X1-type
PfamPF014222.6483498IPR000967Zinc finger, NF-X1-type
CDDcd060082.19E-11526575No hitNo description
SMARTSM004381.2E-4536555IPR000967Zinc finger, NF-X1-type
PfamPF014223.4E-6536554IPR000967Zinc finger, NF-X1-type
CDDcd060085.76E-7591632No hitNo description
SMARTSM004380.26601620IPR000967Zinc finger, NF-X1-type
PfamPF014220.28601618IPR000967Zinc finger, NF-X1-type
CDDcd060081.23E-11650696No hitNo description
SMARTSM004380.088660679IPR000967Zinc finger, NF-X1-type
PfamPF014220.0022660678IPR000967Zinc finger, NF-X1-type
PfamPF0142225720731IPR000967Zinc finger, NF-X1-type
CDDcd060081.58E-8751803No hitNo description
SMARTSM004381.1E-4761780IPR000967Zinc finger, NF-X1-type
PfamPF014220.001761778IPR000967Zinc finger, NF-X1-type
CDDcd060083.47E-5808855No hitNo description
SMARTSM004380.013818836IPR000967Zinc finger, NF-X1-type
PfamPF0142223818835IPR000967Zinc finger, NF-X1-type
CDDcd060083.03E-4860884No hitNo description
SMARTSM004380.076870903IPR000967Zinc finger, NF-X1-type
PfamPF014220.054870885IPR000967Zinc finger, NF-X1-type
PfamPF0142254905932IPR000967Zinc finger, NF-X1-type
SMARTSM004381.4912933IPR000967Zinc finger, NF-X1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1209 aa     Download sequence    Send to blast
MNTGTEKGNN QSNSNASENQ GSQRREPNRN MGRNGRREWV PKRYSHPNKT PNQNFNANPN  60
PNQGFRTERN TVNKTPNQNF NANPNSNQGL RAERNTPNKT PNQNFNANPN PNQGFRAERN  120
TPNKTPNQNF NANRNPNQAF RNERNTPNKT PNQNFNANSN PNQGFRAERN TPNTTPNQNF  180
NDNPNPNQGF RAERNTPNTT PDQNFNANPN PSQGFRARAE RTTGRSNYRY CPVDSASKDG  240
MLSRNGQNQQ YGAMRGRGRR NFQRNNFNRS NYNGRNERSY LHQNYSANEG ILGQLDVNET  300
CTLGQSSTNA GFSGQSSTTE DFIGPSDHGN HSPTEAKRYM KQMDFRDDRN KMNSRDRSNV  360
PQLVKEIEEK LSKGEAECMI CYETVGPSAP VWSCGTCYAI FDLHCIRKWA ESSDVGKSQG  420
EPNWRCPGCQ YVQNLSLEEI RYYCFCGKVR NPEVEFYITP HSCGGPCGKP LKGNKTAQAP  480
CPHTCVLQCH PGPCPTCTAM GPSRPCPCGK TIMTRRCSDQ NSIESCGKQC EKPLECGRHN  540
CENICHEGPC DPCKVLINDA SCFCGKKKEK ILCGDVEIQG ELDWKNGVFR CQKVCMKMLS  600
CQNHNCTKKC HPGECVECEM LPEKIKYCPC GKIQLQRNQR KSCIDPVPTC LEVCEKALPC  660
GIHLCRSTCH HGECAPCSVF VTEKCQCGSS SRTVPCWKTT EENENAKFRC EKLCGKKKNC  720
GKHRCNERCC PQTTRGQGSN VHAGDWDPHL CVLSCGKKLQ CGQHVCTELC HSGHCPPCLL  780
TIFDELSCAC GKTTILPPQP CGTRIPFCSH PCSVPRPCGH PANHNCHPGD CPPCTVPVSK  840
ACVGNHVVKD FQCGSQDILC NKPCGKKRQC GIHSCTRTCH LPPCDSEISS SSSSSSVRMS  900
CGQLCGAPRT DCKHTCTVPC HPSTPCPDTR CKSSVNITCS CGRLTAQVPC DAGGNQMKAD  960
PAFEAFLYKL PAPLQPLQAH SSRVPIGQRQ LVCNDDCTKL KRMYAFGHCT TKANLPGAQI  1020
SDFVKREPEW ISDVEERFRY LVLYKTKDIR LHVFCAMPKE KRDALQLLAE RCNLCVYSAG  1080
RDPRCVLIVQ ATQKSRAPLS SNRNPKGSLP STGKVHPLPF KSSIDMDPRL VIALFDLPSE  1140
ANVNSLILRF GGECELVWLD NNNALVIFKD QARAATALRV VNHASAYRGI IEAPANSVMP  1200
GRGLCNPRR
Functional Description ? help Back to Top
Source Description
UniProtMediates E2-dependent ubiquitination (By similarity). Confers resistance to osmotic stress such as high salinity. Promotes H(2)O(2) production. Negative regulator of some defense-related genes via an salicylic acid (SA)-dependent signaling pathway. Confers susceptibility to the compatible phytopathogen Pseudomonas syringae pv. tomato strain DC3000 (Pst DC3000). Mediates resistance to type A trichothecenes (phytotoxins produced by phytopathogenic fungi). {ECO:0000250, ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By brassinosteroids, osmotic stress and high salinity. Accumulates in response to SA, ethylene, methyl jasmonate (MeJA), flagellin (e.g. flg22), and type A trichothecenes such as T-2 toxin and diacetoxyscirpenol (DAS), but not in response to type B trichothecenes such as deoxynivalenol (DON). {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019081933.10.0PREDICTED: NF-X1-type zinc finger protein NFXL1
SwissprotQ9SY590.0NFXL1_ARATH; NF-X1-type zinc finger protein NFXL1
TrEMBLW1NKX50.0W1NKX5_AMBTC; Uncharacterized protein
STRINGERM958650.0(Amborella trichopoda)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10170.10.0NF-X-like 1