PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00035379-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family TALE
Protein Properties Length: 157aa    MW: 18324.4 Da    PI: 5.7138
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00035379-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox30.65.7e-10931272155
                       HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
          Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                       k +yps++++  LA+++gL+++q+ +WF N+R ++
  PSME_00035379-RA  93 KWPYPSETDKVTLAESTGLDQKQINNWFINQRKRH 127
                       679*****************************985 PP
2ELK30.11.1e-105068422
               ELK  4 hqLlrKYsgyLgsLkqEFs 22
                      +qLlrKYsg+ +sLkqEF+
  PSME_00035379-RA 50 NQLLRKYSGCFSSLKQEFL 68
                      8*****************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011887.0E-54768IPR005539ELK domain
PROSITE profilePS512139.2024767IPR005539ELK domain
PfamPF037891.3E-85068IPR005539ELK domain
PROSITE profilePS5007112.35767130IPR001356Homeobox domain
SuperFamilySSF466892.05E-1969142IPR009057Homeodomain-like
SMARTSM003891.8E-1269134IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.3E-2772132IPR009057Homeodomain-like
CDDcd000864.67E-1279131No hitNo description
PfamPF059206.4E-1887126IPR008422Homeobox KN domain
PROSITE patternPS000270105128IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 157 aa     Download sequence    Send to blast
MQANVASQDK GYCDERERED GGGSSDEEFS FGEIEVHEVD PRAEDRELIN QLLRKYSGCF  60
SSLKQEFLKK KKKGKLPKDA RQKLLEWWNV HYKWPYPSET DKVTLAESTG LDQKQINNWF  120
INQRKRHWKP SEDMQFVVMD SLNPHGASFY MDGGAEC
Functional Description ? help Back to Top
Source Description
UniProtProbably binds to the DNA sequence 5'-TGAC-3'.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY6804051e-176AY680405.1 Picea mariana homeobox transcription factor KN4 (Kn4) mRNA, complete cds.
GenBankBT1125861e-176BT112586.1 Picea glauca clone GQ03317_P14 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021601359.16e-63homeobox protein knotted-1-like 2
RefseqXP_021601361.16e-63homeobox protein knotted-1-like 2
SwissprotO041354e-62KNAP2_MALDO; Homeobox protein knotted-1-like 2
TrEMBLA0A0S2CBH75e-83A0A0S2CBH7_PINPS; Homeobox transcription factor KN4
STRINGPOPTR_0002s11400.16e-62(Populus trichocarpa)
STRINGcassava4.1_010084m2e-61(Manihot esculenta)
STRINGXP_002510027.11e-61(Ricinus communis)
STRINGXP_010059832.14e-61(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08150.11e-54KNOTTED-like from Arabidopsis thaliana