PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00035534-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB
Protein Properties Length: 319aa    MW: 36046.1 Da    PI: 10.276
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00035534-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding461.2e-1456105148
                       TSSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg..tWktIartmgkgRtlkqcksrwqkyl 48 
                       +g W++eEd++l+++v + G    +W+ +a+  g+ R++k+ck+rw +yl
  PSME_00035534-RA  56 KGLWSPEEDDKLINYVIKNGLLrcSWSYVAKQAGLQRCGKSCKLRWINYL 105
                       678*****************889*************************97 PP
2Myb_DNA-binding43.76.5e-14111154146
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       rg+ + +E++l +d++  lG++ W+ Ia+ ++ gRt++++k++w++
  PSME_00035534-RA 111 RGPISRQEEQLMIDLHSILGNR-WSQIASILP-GRTDNEIKNYWNS 154
                       788999****************.*********.***********95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.57751105IPR017930Myb domain
SuperFamilySSF466891.05E-2653152IPR009057Homeodomain-like
SMARTSM007171.2E-755107IPR001005SANT/Myb domain
PfamPF002498.1E-1356105IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.0E-2157112IPR009057Homeodomain-like
CDDcd001673.76E-859105No hitNo description
PROSITE profilePS5129423.251106160IPR017930Myb domain
SMARTSM007174.9E-13110158IPR001005SANT/Myb domain
PfamPF002491.1E-11111154IPR001005SANT/Myb domain
CDDcd001674.72E-9113153No hitNo description
Gene3DG3DSA:1.10.10.608.9E-24113160IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MHKDRGNSTR ACKGKGICNP KSPVSSALLR NLCCVMLINT EAMGGLPVPS KPKLKKGLWS  60
PEEDDKLINY VIKNGLLRCS WSYVAKQAGL QRCGKSCKLR WINYLRPGLK RGPISRQEEQ  120
LMIDLHSILG NRWSQIASIL PGRTDNEIKN YWNSRIKKKL LKRSLSFSSM DSNVNADTKS  180
KIASKYDRTG NTKFVSAPQH LHPSCPYTFS HSTQPVDVKR EEYPLLIHNN INMVTITENR  240
HFCVTNALEL KQEQVQEDQN RGFSIERQST KHQLSSRSQV RNDSCSNTAN YESFSHAGTS  300
PRLQAQGESY STAKSSKCK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-27521603108B-MYB
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA5JYE83e-75A5JYE8_PICGL; R2R3-MYB transcription factor MYB4
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12870.12e-49myb domain protein 46