PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00035567-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family C2H2
Protein Properties Length: 324aa    MW: 37662.7 Da    PI: 8.8629
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00035567-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H220.41.4e-062546223
                      EETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                      +C+dCg sF+ + +L++H  +H
  PSME_00035567-RA 25 VCQDCGASFNKPAHLEQHKLSH 46
                      8*****************9998 PP
2zf-C2H2201.8e-065276123
                      EEET..TTTEEESSHHHHHHHHHHT CS
           zf-C2H2  1 ykCp..dCgksFsrksnLkrHirtH 23
                      ++Cp   C +s++r+++L+rH+ +H
  PSME_00035567-RA 52 FVCPvdGCFYSYKRQDHLNRHLVKH 76
                      89********************998 PP
3zf-C2H218.36.6e-0681105123
                       EEET..TTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                       ++Cp  dC+   s+ snLkrH ++H
  PSME_00035567-RA  81 FVCPkeDCNLQLSSLSNLKRHVKRH 105
                       89**********************9 PP
4zf-C2H216.91.8e-05203227223
                       EET..TTTEEESSHHHHHHHHHH.T CS
           zf-C2H2   2 kCp..dCgksFsrksnLkrHirt.H 23 
                       +C+  +C  sF+ ksnL++Hir  H
  PSME_00035567-RA 203 QCHfdNCLHSFTKKSNLNQHIRAaH 227
                       7*********************888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.603.8E-72343IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS0002802446IPR007087Zinc finger, C2H2
SMARTSM003550.232446IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.842451IPR007087Zinc finger, C2H2
SuperFamilySSF576672.75E-103778No hitNo description
Gene3DG3DSA:3.30.160.604.7E-124478IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.65281IPR007087Zinc finger, C2H2
SMARTSM003550.00175276IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002805476IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.605.6E-579105IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.8581110IPR007087Zinc finger, C2H2
SMARTSM003550.003281105IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028083105IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.607.3E-4144165IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.16144169IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280146169IPR007087Zinc finger, C2H2
SMARTSM0035526172193IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.605.0E-5184224IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015712.362202232IPR007087Zinc finger, C2H2
SMARTSM003550.16202227IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280204227IPR007087Zinc finger, C2H2
SuperFamilySSF576679.66E-8212256No hitNo description
Gene3DG3DSA:3.30.160.601.3E-4227256IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003558.9233259IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280235259IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
REALENDERF TSETEGRSHR RSPCVCQDCG ASFNKPAHLE QHKLSHTGER TFVCPVDGCF  60
YSYKRQDHLN RHLVKHEGKL FVCPKEDCNL QLSSLSNLKR HVKRHEERGE SWQSQNLKSR  120
EVKKYPCPKP CCGKTFTTTT YVEVVCCEPG CYKYFTNEKA LREHVQQNHS RVCCEVCGSR  180
QLKKQIKRHM RIHESQTCVE RIQCHFDNCL HSFTKKSNLN QHIRAAHLGL RPFKCRFAEC  240
EMSFAHKAVR DNHEKTGRHC YVQGDFFEED AAFQSRPCGG RKRKMFTVNT LLKKRVACPD  300
RSSTVLDNGS SFLDWLTSSG RNDL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tf3_A4e-1320104287TRANSCRIPTION FACTOR IIIA
1tf6_A4e-131920610172PROTEIN (TRANSCRIPTION FACTOR IIIA)
1tf6_D4e-131920610172PROTEIN (TRANSCRIPTION FACTOR IIIA)
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1275283RPCGGRKRK
Functional Description ? help Back to Top
Source Description
UniProtEssential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1096510.0BT109651.1 Picea glauca clone GQ03211_B12 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_026425769.11e-101transcription factor IIIA-like
SwissprotQ84MZ41e-77TF3A_ARATH; Transcription factor IIIA
TrEMBLA0A2G5F7C61e-100A0A2G5F7C6_AQUCA; Uncharacterized protein
STRINGAquca_002_01327.11e-101(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.29e-67transcription factor IIIA