PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00035621-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

C2H2

Protein Properties

Length: 167aa MW: 19441.2 Da PI: 6.7715

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00035621-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.9	3.7e-05	29	51	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y C++C+k+F ++ L +H+r H PSME_00035621-RA 29 YFCKICSKRFISRRPLGSHMRAH 51 78*******************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	10.346	29	51	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	1.49E-6	29	51	No hit	No description
Gene3D	G3DSA:3.30.160.60	3.0E-4	29	51	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE pattern	PS00028	0	31	51	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	1.49E-6	139	164	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 167 aa Download sequence Send to blast
MVDVLYPSFQ SKELLENQGT ENPVENFSYF CKICSKRFIS RRPLGSHMRA HVPPSVPTYT 60 FAETEFQKRK RPRFSDAKSM EEKVDEEGLE GNESNLMYVM RMSPKRSWRF VDLDDSFLLG 120 RFVDLDDSFL LGQGLDSNPV ESSLNCDLWR KEFSCWKGLI GHKKLPL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-