PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00035768-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

NF-YB

Protein Properties

Length: 151aa MW: 17035.2 Da PI: 4.347

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00035768-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	75.1	1e-23	11	99	3	91
NF-YB 3 eqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyr 91 ++d lP a + +i+k++lP++ ++++da++++ ec +efi +++se+++ c re+++ti+++ +l al lGf dy+e++ + +++r PSME_00035768-RA 11 KDDVSLPKATMFKIIKEMLPQDVRVARDAQDLLVECCVEFINLISSESNEVCGREEKRTIAPEHVLRALEVLGFGDYIEEVYAAYEQHR 99 67889**************************************************************************9977666655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	2.8E-39	8	142	IPR009072	Histone-fold
SuperFamily	SSF47113	3.11E-35	12	140	IPR009072	Histone-fold
Pfam	PF00808	5.7E-20	15	79	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 151 aa Download sequence Send to blast
MEPMDIVGKS KDDVSLPKAT MFKIIKEMLP QDVRVARDAQ DLLVECCVEF INLISSESNE 60 VCGREEKRTI APEHVLRALE VLGFGDYIEE VYAAYEQHRL ETLDSPKSGR WASGAEMTEE 120 EALAEQQRMF AEARARMNNG NANPPRQSDS D

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1jfi_B	7e-37	12	134	12	133	Transcription Regulator NC2 beta chain
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EF677004	0.0	EF677004.1 Picea sitchensis clone WS02759_P15 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006841904.1	2e-99	protein Dr1 homolog
Refseq	XP_011622414.1	2e-99	protein Dr1 homolog
Refseq	XP_020521360.1	2e-99	protein Dr1 homolog
Swissprot	P49592	9e-82	NC2B_ARATH; Protein Dr1 homolog
TrEMBL	B8LMI4	1e-107	B8LMI4_PICSI; Uncharacterized protein
STRING	ERN03579	6e-99	(Amborella trichopoda)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23090.4	6e-86	nuclear factor Y, subunit B13

Publications ? help Back to Top
Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]