PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00035861-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

WRKY

Protein Properties

Length: 256aa MW: 28910.3 Da PI: 6.9412

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00035861-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	89.3	3.1e-28	163	221	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ++Dgy+WrKYG+K k+s++pr+YYrC+ ++C vkk ver+a+d +v++tY g+Hnhe PSME_00035861-RA 163 MQDGYKWRKYGRKFLKKSPNPRNYYRCSDSSCDVKKTVERDAHDDGIVITTYLGTHNHE 221 58********************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.5E-29	151	223	IPR003657	WRKY domain
SuperFamily	SSF118290	7.45E-26	155	223	IPR003657	WRKY domain
PROSITE profile	PS50811	28.564	158	223	IPR003657	WRKY domain
SMART	SM00774	3.4E-28	163	222	IPR003657	WRKY domain
Pfam	PF03106	2.3E-22	164	221	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 256 aa Download sequence Send to blast
MIMVFTEAAA CAVRRVPVFQ ISSKYFVSFT ESAERIGHFQ DPLKGFSKEQ TQPLQEANCS 60 QHMKGAEAFE ILDFLVFEDH DGGDQSFADF KTGTSGPSSQ LEYARASPSN SPCIQGIQLD 120 NSSTVIQTHG PLDTLNPKEG SRKRKAERTL KYAFVTRSET EIMQDGYKWR KYGRKFLKKS 180 PNPRNYYRCS DSSCDVKKTV ERDAHDDGIV ITTYLGTHNH ESPTVIYYIE RPEMHQASAS 240 TPNFQLGMDG NFFLSL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	4e-21	156	223	7	74	WRKY transcription factor 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A0D6R4C9	2e-47	A0A0D6R4C9_ARACU; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G64810.1	2e-29	WRKY DNA-binding protein 51