PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00035862-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

WRKY

Protein Properties

Length: 240aa MW: 27280.3 Da PI: 7.2174

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00035862-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	89.8	2.1e-28	135	193	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ++Dgy+WrKYG+K k+s++pr+YYrC+ ++C vkk ver+a+d+ +v++tY g+Hnhe PSME_00035862-RA 135 MQDGYKWRKYGRKFLKKSPNPRNYYRCSDSSCDVKKTVERDAHDNGIVITTYLGTHNHE 193 58********************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	9.8E-30	123	195	IPR003657	WRKY domain
SuperFamily	SSF118290	5.49E-26	127	195	IPR003657	WRKY domain
PROSITE profile	PS50811	28.633	130	195	IPR003657	WRKY domain
SMART	SM00774	4.8E-28	135	194	IPR003657	WRKY domain
Pfam	PF03106	1.7E-22	136	193	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 240 aa Download sequence Send to blast
MANFDQRIGH FQDALKGFSK QQTQPLQEAN CSQHMKGAEA FEISDFLVFE DHDGGDQSCA 60 DFKTGTSGPS SQLEYARTFP SNPPCIQGIQ LDNSSTVIQT HGPLDTLNPK EGSRKRKAER 120 TLKYAFVTRS ETEIMQDGYK WRKYGRKFLK KSPNPRNYYR CSDSSCDVKK TVERDAHDNG 180 IVITTYLGTH NHESPTVIYY IERSEMHQAS ASTPNFQLGM DGNFFLSVTM FQISVNNYER

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	2e-21	128	195	7	74	WRKY transcription factor 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A0D6R4C9	8e-47	A0A0D6R4C9_ARACU; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G64810.1	3e-29	WRKY DNA-binding protein 51