PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00036021-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

LBD

Protein Properties

Length: 247aa MW: 27176.7 Da PI: 7.4081

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00036021-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	31.1	6.5e-10	20	58	56	94
DUF260 56 damsslvyeAearardPvyGavgvilklqqqleqlkael 94 ++++sl+yeA+ r+ +P G+vg++ ++++ql+q+++e PSME_00036021-RA 20 AIFRSLLYEACGRMVNPFFGSVGLLCSGNWQLCQAAVES 58 689*******************************99885 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03195	8.9E-6	20	58	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 247 aa Download sequence Send to blast
MSSLLSAMNP YRFFFPFGTA IFRSLLYEAC GRMVNPFFGS VGLLCSGNWQ LCQAAVESIM 60 KGCPIHPIIV DSSGIQMPTE RCNTNPSVRS TLMETITNEL HKVKTKGRFK RRKGTAKDLS 120 LNNSDAEDLV PSQVRRCYPG EFQAAAAMDG TANNLVSSDS SSESLEHFDD PRNHKEAEIE 180 GNISKGMNLG IVNGNSCNDQ NDHKTVKESV FEISHPQART NAVRNLSIFT ICVEVSNAFM 240 NTNAKPT

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A3G6J9E0	1e-107	A0A3G6J9E0_PINTA; ASYMMETRIC LEAVES 2-like protein 37

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G67100.1	2e-23	LOB domain-containing protein 40