PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00036059-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

bHLH

Protein Properties

Length: 211aa MW: 23465.4 Da PI: 9.0149

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00036059-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	11.6	0.00054	164	181	2	19
HHHHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsa 19 r +h E+rRR +iN++ PSME_00036059-RA 164 RSKHYSTEQRRRTKINDR 181 889*************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	9.3E-4	159	181	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 211 aa Download sequence Send to blast
MSMFTVGKEI ATFLLSTGIL SKAWEESHLA SNSESFSALH MLRCIFNGSE YGEGNIQTDN 60 KVFYACLKGN KTKPEVTKAS LTTNYGGGAF TMWEERIHVV DGNRTFDGLA TKYLEKSRYW 120 PAVREKANFS FPANTAFSLS MVETDDLPPK ADGRSSDQKA NTPRSKHYST EQRRRTKIND 180 RQMLPPENQS LGYLAIAVGG SQAFMVVIGS H

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G08130.3	2e-10	bHLH family protein