PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00036084-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

CAMTA

Protein Properties

Length: 146aa MW: 17261.7 Da PI: 9.4112

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00036084-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	106.4	1.8e-33	12	89	4	81
CG-1 4 ekkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevl 81 + rwlk+ ei+ iL n ++ +l+++++++p+sgsl+Ly+rk++r+frkDG++w+kkkdgkt+rE+he+LK g+ve PSME_00036084-RA 12 AQIRWLKPVEILFILRNSNNLKLSSDPPNKPQSGSLFLYDRKVLRFFRKDGHNWRKKKDGKTIREAHERLKFGTVEKS 89 488***********************************************************************8754 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	45.798	5	131	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	5.2E-30	8	122	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	2.0E-28	12	89	IPR005559	CG-1 DNA-binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 146 aa Download sequence Send to blast
MEFDFTELVR DAQIRWLKPV EILFILRNSN NLKLSSDPPN KPQSGSLFLY DRKVLRFFRK 60 DGHNWRKKKD GKTIREAHER LKFGTVEKSN SDRVYAVNDI KNGDCLYAEE ELIWDCVYAD 120 KTQEISDLAK KEGHQLRPFE KSLKNL

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in freezing tolerance in association with CAMTA1 and CAMTA3. Contributes together with CAMTA1 and CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:23581962). Involved together with CAMTA3 and CAMTA4 in the positive regulation of a general stress response (PubMed:25039701). Involved in tolerance to aluminum. Binds to the promoter of ALMT1 transporter and contributes to the positive regulation of aluminum-induced expression of ALMT1 (PubMed:25627216). {ECO:0000250\|UniProtKB:Q8GSA7, ECO:0000269\|PubMed:23581962, ECO:0000269\|PubMed:25039701, ECO:0000269\|PubMed:25627216, ECO:0000305\|PubMed:11925432}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By salt, wounding, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by aluminum (PubMed:25627216). {ECO:0000269\|PubMed:12218065, ECO:0000269\|PubMed:25627216}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016553914.1	1e-36	PREDICTED: calmodulin-binding transcription activator 4
Swissprot	Q6NPP4	2e-33	CMTA2_ARATH; Calmodulin-binding transcription activator 2
TrEMBL	A0A1U8FC93	3e-35	A0A1U8FC93_CAPAN; calmodulin-binding transcription activator 4
STRING	Solyc05g015650.2.1	3e-35	(Solanum lycopersicum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G64220.2	6e-36	Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains

Publications ? help Back to Top
Benn G, et al. A key general stress response motif is regulated non-uniformly by CAMTA transcription factors. Plant J., 2014. 80(1): p. 82-92 [PMID:25039701] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986]