PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00036094-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family bHLH
Protein Properties Length: 673aa    MW: 74287.4 Da    PI: 5.5979
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00036094-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.74.4e-13469512755
                       HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        +Er+RR+++N+++  Lr l+Pk      +K++ a+iL  A+eYIk+Lq
  PSME_00036094-RA 469 VAERKRRKKLNERLYALRALVPKI-----TKMDRASILGDAIEYIKELQ 512
                       68*********************7.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.3E-23117270IPR025610Transcription factor MYC/MYB N-terminal
CDDcd000832.90E-16459516No hitNo description
PROSITE profilePS5088816.317462511IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-18467531IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-17468517IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-18469525IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.0E-10469512IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009555Biological Processpollen development
GO:0048657Biological Processanther wall tapetum cell differentiation
GO:0005634Cellular Componentnucleus
GO:0000978Molecular FunctionRNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 673 aa     Download sequence    Send to blast
MAARSAMGTG GKNRESRIKD QLNRRARLFC LSRGVQRHLV IARQWLADAL VLTPDTSILS  60
GDSLTTAWPG SGEYLYLSPT PSSLGMFCFL WPRDPDFEPR KEHFRSGSLN IHLAAPQERL  120
RSLVGSKRWD YVIYWKLSDD QRCLDWTGCC CSGADESGQG LQNPSPESHL FFSPRYFEGG  180
SCRDVMVQHP RCTTCEILAE FPSSIPLDSG IQGQVFFSGQ PRWVNFPNIG DPDAGQEAVQ  240
TQVLIPVRNG LVELFVSKPV AENAALIQFV LTQCDPWLPQ MYDPNNLFSP SATASLGGCG  300
FGSVSETAGT LPWLPAATGD SCVPWDADKA LSESQLSIHM ATPHLNFIGQ QFQPQVAASG  360
QINQKNDFYE GSADSINHSD KPPAVHIDPV SLQEIQQASL PMRTSSLPRG HGLTESPHTS  420
GLSKEVQDKE VKQEISRADS SDCTDQMEDD DDQKAAGRSG RRHLSKNLVA ERKRRKKLNE  480
RLYALRALVP KITKMDRASI LGDAIEYIKE LQQQVKELQD ELDEMDIHPG NPTTPPNLEN  540
GGQTALDEEA HARCSGKTDL TKGPGNATEE TVQTMQIEVS QVDAHVFNLR IFSEKRVGGF  600
VRLMQAIDAL GLDILNANIT SFRGLLRDKD VMQAGAEQLR DSLLEMTLHP DILRSGEGTA  660
ASDHQQRHIH QAT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A3e-15460521263Transcription factor MYC2
5gnj_B3e-15460521263Transcription factor MYC2
5gnj_E3e-15460521263Transcription factor MYC2
5gnj_F3e-15460521263Transcription factor MYC2
5gnj_G3e-15460521263Transcription factor MYC2
5gnj_I3e-15460521263Transcription factor MYC2
5gnj_M3e-15460521263Transcription factor MYC2
5gnj_N3e-15460521263Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1470477ERKRRKKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002985518.11e-140transcription factor ABORTED MICROSPORES
TrEMBLD8SQG01e-138D8SQG0_SELML; Uncharacterized protein AMS-1
STRINGEFJ133921e-139(Selaginella moellendorffii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16910.19e-74bHLH family protein