PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00036132-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family WOX
Protein Properties Length: 432aa    MW: 47774.1 Da    PI: 7.1585
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00036132-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox55.68.9e-182080257
                      T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
          Homeobox  2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                      ++R+++++eq+++Le+ F + + +p +ee++++ ++l    ++ + +V++WFqNr+ + k+
  PSME_00036132-RA 20 KSRWNPKPEQIQILESIFTSgTVNPAREEIKRIRAQLemfgQVGDVNVFYWFQNRKSRSKR 80
                      89*****************99**************************************97 PP
2Wus_type_Homeobox106.91.2e-341981264
  Wus_type_Homeobox  2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64
                       a++RW+P+peQi+iLe++++sG+++P++eei+ri+a+Le +G+++d NVfyWFQNrk+R+++k
   PSME_00036132-RA 19 AKSRWNPKPEQIQILESIFTSGTVNPAREEIKRIRAQLEMFGQVGDVNVFYWFQNRKSRSKRK 81
                       689**********************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.11E-121483IPR009057Homeodomain-like
PROSITE profilePS5007111.3371681IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.606.7E-81783IPR009057Homeodomain-like
SMARTSM003893.4E-71885IPR001356Homeobox domain
CDDcd000861.16E-72081No hitNo description
PfamPF000461.3E-152080IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 432 aa     Download sequence    Send to blast
MGELSHNYTL ERDSSPPKAK SRWNPKPEQI QILESIFTSG TVNPAREEIK RIRAQLEMFG  60
QVGDVNVFYW FQNRKSRSKR KPRLPAAQRT KARTQSGTQS SSSSTSTSRS TSVQTNKTIP  120
DISNSPASFI QTNIGNQYRS SAVPISQFAG HQYDVQGVYE EMNKASSVQP QTFTALLNSP  180
LNPMHNNVEN QNSYSSVPVP SFAGHHYDLQ AVPSQTFTGL LNSPLNPMPN NPENLYSCSS  240
VPVPSFAGHH YDLQAVPSQR STGFPNNPPN YDLQAVPSQT FTGFPNNPPN CMHSQIRDQY  300
CSSSTVPVGL SAENIYGQER LYEEMSKASA FDQSQTLADV ANIRPNPMQR IGTVQDGLII  360
NSNVPLISVL INDAQITVPS GLINFRDFFG DNALLFHSSG EPVLVNEFGL TSLEHGAMYF  420
MNQHEVSHIS KQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17682RSKRKPR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33880.12e-25homeobox-3