PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00036209-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family WRKY
Protein Properties Length: 381aa    MW: 42382.8 Da    PI: 8.7521
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00036209-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY92.24e-29168226259
                       --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                        Dg++WrKYGqK+ ++++ prsYY+C+ a  Cpvkk+v+r+a+dp++v++tYegeH+h+
  PSME_00036209-RA 168 ADGCQWRKYGQKMTRNNPLPRSYYKCAWApACPVKKQVQRCAQDPTIVITTYEGEHTHS 226
                       69*************************999****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.0E-32154226IPR003657WRKY domain
SuperFamilySSF1182907.72E-26160227IPR003657WRKY domain
PROSITE profilePS5081125.821162228IPR003657WRKY domain
SMARTSM007741.4E-33167227IPR003657WRKY domain
PfamPF031064.9E-25169225IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
MVTTIVVAEI NRVNKENQKL KSMLESVSSK YKYLQKHIRS LVQQPQPKGV DGSQIFNPDH  60
HSEDVLCLAS NQSDQSSSRN ERGEEKEKKR AKFMDDLQLP SKKRKINYIQ SKQFENGINS  120
SLDDNSCDHG ESPNQKLQEQ NRDFGEKKAA AQKRIVAVRT RSEESAKADG CQWRKYGQKM  180
TRNNPLPRSY YKCAWAPACP VKKQVQRCAQ DPTIVITTYE GEHTHSLSPL AMAVMHGGSS  240
NQSIGEGMNT QNFVPDNQFI PCIARISTSS TPTITLDLTD NRPSQPGLPL QYPHLAAGSF  300
QQSNPLCSDM GQVLDESELG NYSSFMQNYV ASIKADPKFT AALSVAIADS MLKLGDPVKG  360
MMPKFHPVRQ CANGSAHEAF V
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-20157227776Probable WRKY transcription factor 4
2lex_A4e-20157227776Probable WRKY transcription factor 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
187104KKRAKFMDDLQLPSKKRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU2697362e-53EU269736.1 Pinus monticola WRKY transcription factor PmWRKY88 mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A482CVK90.0A0A482CVK9_9SPER; WRKY164
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01720.14e-37WRKY family protein