PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00036211-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB
Protein Properties Length: 152aa    MW: 17170.1 Da    PI: 7.6602
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00036211-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding33.41.1e-101659344
                      SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
   Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                      +WT e  +++ +a + + ++   +W+++a++++ g++++++k ++
  PSME_00036211-RA 16 NWTSEQNKQFEKALAIYDKDradRWHKVAAMVP-GKSPEEVKKHY 59
                      7********************************.**********9 PP
2Myb_DNA-binding31.34.7e-1084127344
                       SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
   Myb_DNA-binding   3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 
                       +WTt+  +++ +a + + ++   +W+ +a++++ g++++++k ++
  PSME_00036211-RA  84 KWTTQQNKQFEKALAIYDKDtpdRWHNVASMVP-GKSPEEVKKHY 127
                       8********************************.**********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129311.8331267IPR017884SANT domain
SMARTSM007173.2E-81365IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.0E-51569IPR009057Homeodomain-like
SuperFamilySSF466896.58E-131670IPR009057Homeodomain-like
CDDcd001676.54E-81659No hitNo description
PfamPF002492.4E-81659IPR001005SANT/Myb domain
PROSITE profilePS5129311.88480135IPR017884SANT domain
SMARTSM007171.9E-981133IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.5E-583135IPR009057Homeodomain-like
SuperFamilySSF466893.07E-1284138IPR009057Homeodomain-like
CDDcd001672.48E-784131No hitNo description
PfamPF002498.1E-884127IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 152 aa     Download sequence    Send to blast
MASSSRKASY SGSVTNWTSE QNKQFEKALA IYDKDRADRW HKVAAMVPGK SPEEVKKHYE  60
ILEEDLNRIE AGKASSSSSD SVTKWTTQQN KQFEKALAIY DKDTPDRWHN VASMVPGKSP  120
EEVKKHYEIL LEDLNCIEAG KVPFPNYKSS GS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-328152278RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes dorsal identity. {ECO:0000269|PubMed:15790677}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by both CYC and DICH. {ECO:0000269|PubMed:15790677, ECO:0000269|PubMed:16236768}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1135572e-67BT113557.1 Picea glauca clone GQ03413_A01 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021680636.12e-35protein RADIALIS-like 3
SwissprotQ58FS33e-32RAD_ANTMA; Transcription factor RADIALIS
TrEMBLA0A1E5UUT91e-44A0A1E5UUT9_9POAL; Protein RADIALIS-like 3
STRINGPOPTR_0007s13000.15e-33(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.23e-32RAD-like 6
Publications ? help Back to Top
  1. Corley SB,Carpenter R,Copsey L,Coen E
    Floral asymmetry involves an interplay between TCP and MYB transcription factors in Antirrhinum.
    Proc. Natl. Acad. Sci. U.S.A., 2005. 102(14): p. 5068-73
    [PMID:15790677]
  2. Costa MM,Fox S,Hanna AI,Baxter C,Coen E
    Evolution of regulatory interactions controlling floral asymmetry.
    Development, 2005. 132(22): p. 5093-101
    [PMID:16236768]
  3. Stevenson CE, et al.
    Crystallization and preliminary X-ray analysis of the RAD protein from Antirrhinum majus.
    Acta Crystallogr. Sect. F Struct. Biol. Cryst. Commun., 2005. 61(Pt 10): p. 885-8
    [PMID:16511186]
  4. Stevenson CE, et al.
    Crystal structure of the MYB domain of the RAD transcription factor from Antirrhinum majus.
    Proteins, 2006. 65(4): p. 1041-5
    [PMID:17044043]