PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00036243-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family AP2
Protein Properties Length: 686aa    MW: 74468.2 Da    PI: 5.7972
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00036243-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP244.63.5e-143583255
               AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                       y+GV+  +++g+Wv++Ir+p++   + r++lg+f t+e+Aa a++ a+ +l +
  PSME_00036243-RA 35 FYRGVT--ERSGKWVSQIREPKK---KSRIWLGTFPTPEMAALAHVSAAFSLGK 83
                      79***8..558*********854...6**********************99876 PP
2AP2461.3e-14285333255
               AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                        y+GV+  k++g+Wv++Ir+p++   + r++lg+f t+e+Aa a++ a+ +l +
  PSME_00036243-RA 285 FYRGVT--KRSGKWVSQIREPKK---KSRIWLGTFLTPEMAALAHDSAAFSLGK 333
                       79***8..567*********854...6**********************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103216.5682391IPR001471AP2/ERF domain
SuperFamilySSF541714.45E-133591IPR016177DNA-binding domain
SMARTSM003802.3E-163597IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.4E-193692IPR001471AP2/ERF domain
CDDcd000184.00E-193691No hitNo description
PfamPF008472.9E-73683IPR001471AP2/ERF domain
PROSITE profilePS5103217.174275341IPR001471AP2/ERF domain
SMARTSM003805.6E-18285347IPR001471AP2/ERF domain
SuperFamilySSF541711.63E-13285341IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.106.1E-21286342IPR001471AP2/ERF domain
CDDcd000186.86E-20286341No hitNo description
PfamPF008471.2E-7286333IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 686 aa     Download sequence    Send to blast
MTTRPAAEIN NADTESPMCD GDKQRGRGKG NRHPFYRGVT ERSGKWVSQI REPKKKSRIW  60
LGTFPTPEMA ALAHVSAAFS LGKEYSAFNY PSLAALSPRP ATLSAKDIPA AATAATGEFA  120
TSHSKEIQAA AAAAADEFQR SSEQDRGEGR SPDLMGTNSV IPIHADAVLP PESRNHKAAA  180
CASDSARVTN FLPGSRMSID QKLWCPERES IFLDFPRPAT SSAKDIQRAA LAAAAEFHRP  240
SEQDRSEGRS SDLTGTNTVI RTNADALIPV CNGDKQRGRG NRHPFYRGVT KRSGKWVSQI  300
REPKKKSRIW LGTFLTPEMA ALAHDSAAFS LGKEYSAFNY PSLAAFLPRP ATLSAKDIRA  360
AATAATGEFA TSHSKEIQAA AAAAADVFQR FSEQDRGEGR SPDLMGTNSV IPIHADAVLP  420
PESRIHKAAA CASDSARVTN FVSGSRMSID QKLGGSRFLD FPRPATSSDK DIQRAAPAAA  480
AEFHRPSEQD RSEGRSPDLT GTNTVIPTYA DALIPMCNGF SRRVTMGNSY AGLSVLEQLD  540
QLSVLELLEQ FRGLLEQLGL LELQLMLLEQ RPEAFEELAP ELLEQHGLPE LLGLSRLLGL  600
LGQLGLPELL VQLEQLGLPE QLGQPKLLGQ LGLPELLEQP ELPELLEQLE MPELLEQPEL  660
PGQPELLAML HELLEPELLA LSLPYH
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLB8LM174e-36B8LM17_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32800.11e-27ERF family protein