PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00036287-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family SBP
Protein Properties Length: 180aa    MW: 19635.1 Da    PI: 9.8307
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00036287-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP1093.1e-3464139278
                       -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
               SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                       C  egC +dl++ak+yhrrhkv e+hska++v++ g++qrf qqCsrfh l efDe krsCr+rL +hn+rrrk+q+
  PSME_00036287-RA  64 CAPEGC-SDLTNAKHYHRRHKVREFHSKATSVVTGGVQQRFFQQCSRFHLLAEFDEVKRSCRKRLVDHNRRRRKPQT 139
                       888999.59*****************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5114126.61561137IPR004333Transcription factor, SBP-box
Gene3DG3DSA:4.10.1100.104.7E-2662124IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.57E-3163142IPR004333Transcription factor, SBP-box
PfamPF031101.7E-2364136IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MSPRCSITDD VSSRVAAHSG SRGAAYWLLT GAISQPSAGP TALPRCGLLA LDGRHQPALG  60
GAHCAPEGCS DLTNAKHYHR RHKVREFHSK ATSVVTGGVQ QRFFQQCSRF HLLAEFDEVK  120
RSCRKRLVDH NRRRRKPQTN TIVTAVSSAE AATALKVEDD DNNVSGSCNN TRGQICFLLP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A3e-24641361184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1119136KRSCRKRLVDHNRRRRKP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010913682.13e-35squamosa promoter-binding-like protein 10
RefseqXP_010913683.13e-35squamosa promoter-binding-like protein 10
TrEMBLA0A1B4Z1G53e-34A0A1B4Z1G5_MARPO; SQUAMOSA promoter-binding protein-like protein
STRINGGSMUA_Achr3P00810_0011e-34(Musa acuminata)
STRINGGSMUA_Achr7P05010_0011e-34(Musa acuminata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02065.12e-33squamosa promoter binding protein-like 8