PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00036373-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

VOZ

Protein Properties

Length: 427aa MW: 48310.4 Da PI: 5.3283

Description

VOZ family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00036373-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	VOZ	405	1.6e-124	112	328	1	217
VOZ 1 pppsaflgpkcalwdctrpaqgsewlqdycssfhatlalneglpgttpvlrpkgidlkdgllfaalsakvqgkevgipecegaatakspwnaa 93 ppp+aflgpkcalwdc rpaqg++w+qdy s fh +la neg+p ++pvlrp+gidlkdg+lfaalsak+q k vgipecega+takspwna PSME_00036373-RA 112 PPPAAFLGPKCALWDCLRPAQGTKWCQDYYSDFHMNLASNEGAPRMRPVLRPRGIDLKDGPLFAALSAKTQEKAVGIPECEGATTAKSPWNAY 204 89***************************************************************************************** PP VOZ 94 elfdlsllegetirewlffdkprrafesgnrkqrslpdysgrgwhesrkqvmkefgglkrsyymdpqpsssfewhlyeyeineldalalyrle 186 e+fd+ +lege++rewlffdkprrafesgnrkqrslpdysgr whesrkqv+k+fgglkrsyymdpqps++fewhlyeyein++da+alyrle PSME_00036373-RA 205 EIFDMYVLEGESMREWLFFDKPRRAFESGNRKQRSLPDYSGRSWHESRKQVIKDFGGLKRSYYMDPQPSTQFEWHLYEYEINDCDACALYRLE 297 ***************************************************************************************** PP VOZ 187 lklvdekksakgkvskdsladlqkklgrlta 217 lk+v +kk++kgkv d+l+dlq++lg+l+a PSME_00036373-RA 298 LKMVCSKKNTKGKVGGDPLVDLQHQLGKLSA 328 ***************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 427 aa Download sequence Send to blast
DFLVDDLHTP EKDFEKVSRC TNIGEGLHQN SYPQTSVQLP ANIEHQENNN YVQTSEQFPP 60 NLVEGLEVTS GLEGGQINFH QDYIPAAQPI FTLTGEEETS PVFNGPQPGL CPPPAAFLGP 120 KCALWDCLRP AQGTKWCQDY YSDFHMNLAS NEGAPRMRPV LRPRGIDLKD GPLFAALSAK 180 TQEKAVGIPE CEGATTAKSP WNAYEIFDMY VLEGESMREW LFFDKPRRAF ESGNRKQRSL 240 PDYSGRSWHE SRKQVIKDFG GLKRSYYMDP QPSTQFEWHL YEYEINDCDA CALYRLELKM 300 VCSKKNTKGK VGGDPLVDLQ HQLGKLSAEF SWNGSNYTYS ASTQVAPIGK SLLMGHECSM 360 VILSKKQVDA MQLNDKRELT KYSTLYNYSI YFKEMIDALP TISNAIIKGI MEFDANSFAP 420 FQQASRY

Sequence ? help Back to Top

Protein Sequence Length: 427 aa Download sequence Send to blast

DFLVDDLHTP EKDFEKVSRC TNIGEGLHQN SYPQTSVQLP ANIEHQENNN YVQTSEQFPP  60
NLVEGLEVTS GLEGGQINFH QDYIPAAQPI FTLTGEEETS PVFNGPQPGL CPPPAAFLGP  120
KCALWDCLRP AQGTKWCQDY YSDFHMNLAS NEGAPRMRPV LRPRGIDLKD GPLFAALSAK  180
TQEKAVGIPE CEGATTAKSP WNAYEIFDMY VLEGESMREW LFFDKPRRAF ESGNRKQRSL  240
PDYSGRSWHE SRKQVIKDFG GLKRSYYMDP QPSTQFEWHL YEYEINDCDA CALYRLELKM  300
VCSKKNTKGK VGGDPLVDLQ HQLGKLSAEF SWNGSNYTYS ASTQVAPIGK SLLMGHECSM  360
VILSKKQVDA MQLNDKRELT KYSTLYNYSI YFKEMIDALP TISNAIIKGI MEFDANSFAP  420
FQQASRY

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator acting positively in the phytochrome B signaling pathway. Functions redundantly with VOZ2 to promote flowering downstream of phytochrome B (phyB). Down-regulates 'FLOWERING LOCUS C' (FLC) and up-regulates 'FLOWERING LOCUS T' (FT). Binds to the 38-bp cis-acting region of the AVP1 gene. Interacts with phyB in the cytoplasm and is translocated to the nucleus at signal transmission, where it is subjected to degradation in a phytochrome-dependent manner. {ECO:0000269\|PubMed:15295067, ECO:0000269\|PubMed:22904146}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By far-red light. {ECO:0000269\|PubMed:22904146}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010260370.1	1e-132	PREDICTED: transcription factor VOZ1
Swissprot	Q9SGQ0	1e-120	VOZ1_ARATH; Transcription factor VOZ1
TrEMBL	A0A1U8A0G4	1e-130	A0A1U8A0G4_NELNU; transcription factor VOZ1
STRING	XP_010260370.1	1e-131	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28520.2	1e-122	vascular plant one zinc finger protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Yasui Y,Kohchi T VASCULAR PLANT ONE-ZINC FINGER1 and VOZ2 repress the FLOWERING LOCUS C clade members to control flowering time in Arabidopsis. Biosci. Biotechnol. Biochem., 2014. 78(11): p. 1850-5 [PMID:25351333] Kumar S,Choudhary P,Gupta M,Nath U VASCULAR PLANT ONE-ZINC FINGER1 (VOZ1) and VOZ2 Interact with CONSTANS and Promote Photoperiodic Flowering Transition. Plant Physiol., 2018. 176(4): p. 2917-2930 [PMID:29507119] Song C,Lee J,Kim T,Hong JC,Lim CO VOZ1, a transcriptional repressor of DREB2C, mediates heat stress responses in Arabidopsis. Planta, 2018. 247(6): p. 1439-1448 [PMID:29536220]