PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00036434-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family WRKY
Protein Properties Length: 343aa    MW: 38956.3 Da    PI: 8.4787
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00036434-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY85.93.7e-27167225259
                       --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                       +Dg++WrKYGqK+ k+++ pr YYrC++a gCpvkk+v+r+a++p+ v++tY+geH+h+
  PSME_00036434-RA 167 SDGCQWRKYGQKMTKNNQRPRCYYRCAMApGCPVKKQVQRCAQNPTKVITTYKGEHTHS 225
                       7***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.6E-30153225IPR003657WRKY domain
SuperFamilySSF1182901.44E-25158226IPR003657WRKY domain
PROSITE profilePS5081125.052161227IPR003657WRKY domain
SMARTSM007746.6E-33166226IPR003657WRKY domain
PfamPF031063.6E-24168224IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MDEMLPFLIT VLVAEINRID EENQKLKSMF KRVCCRYNNL QKHIRSMLQQ QKEVDGSQIF  60
YRDRRREEIL CSWSVDVDSG SAVLHQSHQY LDGREKGGEQ EKKNAKFMDE EQVTSKKRKN  120
GMINSSIAQE ELPHKKFQVK CLSSQYTTAA PKRAVSVQTR SEVAQTSDGC QWRKYGQKMT  180
KNNQRPRCYY RCAMAPGCPV KKQVQRCAQN PTKVITTYKG EHTHSLTAPA MAAMHCSSNQ  240
FIGEEMKIEN FLADNHSIPC IARISTSSTV PTITLDLTDN WPNPGLQLQP AHLEACSFQH  300
VTSSSNDMGQ ALDYHNQLDY CSSIMENSVA SIKAIPTSMH PLL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-20157228878Probable WRKY transcription factor 4
2lex_A1e-20157228878Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A482CVK91e-102A0A482CVK9_9SPER; WRKY164
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04450.17e-38WRKY family protein