PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00036522-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB
Protein Properties Length: 735aa    MW: 80730.7 Da    PI: 5.754
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00036522-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.14.6e-1452100148
                       TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 
                       +g W+ eEde+lv++++  G+   W+ +a+  g+ R++k+c++rw +yl
  PSME_00036522-RA  52 KGYWSREEDEKLVNYIRNNGNLgGWSYVAKQAGLQRCGKSCRLRWINYL 100
                       689*****************9899***********************97 PP
2Myb_DNA-binding42.31.7e-13106150147
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       rg+++ +E+ l++++   lG++ W++Ia+ ++ gRt++++k++w k+
  PSME_00036522-RA 106 RGSFSYQEEMLIIRLQSILGNR-WSLIAAQLP-GRTDNELKNYWKKL 150
                       899*******************.*********.***********997 PP
3Myb_DNA-binding27.11e-084595211846
                       HTTTT...................................-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding  18 qlGgg...................................tWktIartmgkgRtlkqcksrwqk 46 
                       qlGg+                                   +W++Ia+ ++ gRt++q+k++w +
  PSME_00036522-RA 459 QLGGPppdratdgdskvatspsessaakrekhyyhgpstsRWSLIAAQLP-GRTDNQLKNYWKS 521
                       55555555555555555555555555555556666667889*********.***********75 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129420.81147104IPR017930Myb domain
SuperFamilySSF466898.98E-2550147IPR009057Homeodomain-like
SMARTSM007172.5E-851102IPR001005SANT/Myb domain
PfamPF002496.5E-1252100IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-2054107IPR009057Homeodomain-like
CDDcd001678.86E-755100No hitNo description
PROSITE profilePS5129415.16105156IPR017930Myb domain
SMARTSM007171.9E-12105153IPR001005SANT/Myb domain
PfamPF002491.2E-11106150IPR001005SANT/Myb domain
CDDcd001673.49E-9108150No hitNo description
Gene3DG3DSA:1.10.10.601.6E-19108150IPR009057Homeodomain-like
SMARTSM007170.041406525IPR001005SANT/Myb domain
PROSITE profilePS512948.707469527IPR017930Myb domain
SuperFamilySSF466891.12E-7489529IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.8E-10493528IPR009057Homeodomain-like
PfamPF002496.1E-6494521IPR001005SANT/Myb domain
CDDcd001673.00E-5499520No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 735 aa     Download sequence    Send to blast
MRYTQGQGVI SEAVPSTPAL GMREQEKMRY TQGQGVISEG VPSTPSKPVL KKGYWSREED  60
EKLVNYIRNN GNLGGWSYVA KQAGLQRCGK SCRLRWINYL RPGLKRGSFS YQEEMLIIRL  120
QSILGNRWSL IAAQLPGRTD NELKNYWKKL NLKHDLSAGS SSSQSNVTDT KSHIPTHSNC  180
NSVSVHAHDV LMSSQSSQKY LDAIPEGFQA ANKTFNVVNS CKNMLCVPGL MELKHKQVQD  240
QTDNEFSVDT NFTNGQEICY PNLWTNASSI HIHEGFYNPA AFISPSLHAK SSTCDVHLII  300
DSCSSTALEP HVAPCFSDIS PCSTGIDTLA LVEREKLEND ENHIMIQYSN VTDSSDIVDP  360
GAYTSHEGDV SILDKHGSLY QSYSPLNPHC QFSWPVGEFS EIPCQKDCRD SEPEAAVAVE  420
ETMELGLGRD PKAPVATEVP EVRSPFGPAD GPTPEAAAQL GGPPPDRATD GDSKVATSPS  480
ESSAAKREKH YYHGPSTSRW SLIAAQLPGR TDNQLKNYWK SCIKKKINLK HDLSAGSSSS  540
ESNVNILTQS NSNSVSAHAH DVLASSQSSQ EYLDGIPEGS QAPNKVFNVV NSCKNDLLCV  600
SGVTNISLGS TGIETLALVE SEKLENDENH ITIEYSNPID SSDMVDPVAY TSHEGQVSIL  660
DKYGSLYQSY SPLNPHYQFS WSAGQFSKIP CQKDCRDSLN LSYDEYLGVP AFIDEGKSIS  720
YINRTTGSKW IVRNS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-22481473100B-MYB
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01680.37e-44myb domain protein 55