PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00036692-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family HD-ZIP
Protein Properties Length: 222aa    MW: 25050.5 Da    PI: 9.8279
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00036692-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox53.83.3e-1791143456
                       -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
          Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                       + +++++q   Lee F kn  p  ++++ LA +l+L  rqV vWFqNrR + k
  PSME_00036692-RA  91 KLRLSRDQYALLEESFLKNTVPEPKQKQALALQLNLRPRQVEVWFQNRRVRTK 143
                       567899********************************************988 PP
2HD-ZIP_I/II101.85.9e-3390177290
       HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                       kk+rls++q +lLEesF +++  ep++K++la +L+l+prqv+vWFqnrR Rtk  q+E+d+e Lkr+ ++l+++n++L+ke eeLr +
  PSME_00036692-RA  90 KKLRLSRDQYALLEESFLKNTVPEPKQKQALALQLNLRPRQVEVWFQNRRVRTKFEQTEVDCELLKRCNESLAQQNRKLHKELEELR-T 177
                       9****************999999***************************************************************9.4 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007116.56885145IPR001356Homeobox domain
SMARTSM003892.6E-1287149IPR001356Homeobox domain
CDDcd000868.49E-1390143No hitNo description
SuperFamilySSF466895.13E-1790152IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.9E-1690143IPR009057Homeodomain-like
PfamPF000461.5E-1491143IPR001356Homeobox domain
PROSITE patternPS000270120143IPR017970Homeobox, conserved site
SMARTSM003404.9E-13145188IPR003106Leucine zipper, homeobox-associated
PfamPF021831.1E-6146178IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MFDRSGGDSH RSAGKAKVPV SRPSDANKIP ISCYSNEHAG TINLSSSHTT VDSNATNPVS  60
ADHMFKRKRD NGQVCSWVLN DVAEKEGCSK KLRLSRDQYA LLEESFLKNT VPEPKQKQAL  120
ALQLNLRPRQ VEVWFQNRRV RTKFEQTEVD CELLKRCNES LAQQNRKLHK ELEELRTLEI  180
LSPLRPAATL TLCPSCKTVS AADNNSHFTL PKARSMFMRG AQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008798887.11e-48homeobox-leucine zipper protein HAT22-like
RefseqXP_009388885.12e-48PREDICTED: homeobox-leucine zipper protein HAT4
RefseqXP_010939328.12e-48homeobox-leucine zipper protein HAT9
SwissprotP466042e-44HAT22_ARATH; Homeobox-leucine zipper protein HAT22
TrEMBLA9NKN43e-65A9NKN4_PICSI; Uncharacterized protein
STRINGXP_008798887.15e-48(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37790.16e-40HD-ZIP family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Liu T,Longhurst AD,Talavera-Rauh F,Hokin SA,Barton MK
    The Arabidopsis transcription factor ABIG1 relays ABA signaled growth inhibition and drought induced senescence.
    Elife, 2017.
    [PMID:27697148]
  3. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]