PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00036693-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family HD-ZIP
Protein Properties Length: 224aa    MW: 25214.6 Da    PI: 9.3813
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00036693-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox53.73.4e-1793145456
                       -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
          Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                       + +++++q   Lee F kn  p  ++++ LA +l+L  rqV vWFqNrR + k
  PSME_00036693-RA  93 KLRLSRDQYALLEESFLKNTVPEPKQKQALALQLNLRPRQVEVWFQNRRVRTK 145
                       567899********************************************988 PP
2HD-ZIP_I/II101.28.9e-3392178288
       HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLr 88 
                       kk+rls++q +lLEesF +++  ep++K++la +L+l+prqv+vWFqnrR Rtk  q+E+d+e Lkr+ ++l+++n++L+ke eeLr
  PSME_00036693-RA  92 KKLRLSRDQYALLEESFLKNTVPEPKQKQALALQLNLRPRQVEVWFQNRRVRTKFEQTEVDCELLKRCNESLAQQNRKLQKELEELR 178
                       9****************999999**************************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007116.56887147IPR001356Homeobox domain
SMARTSM003892.6E-1289151IPR001356Homeobox domain
CDDcd000861.31E-1292145No hitNo description
SuperFamilySSF466895.13E-1792154IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.9E-1692145IPR009057Homeodomain-like
PfamPF000461.5E-1493145IPR001356Homeobox domain
PROSITE patternPS000270122145IPR017970Homeobox, conserved site
SMARTSM003404.2E-14147190IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MLDRSGGTGD SQRSAGKAKV PVSRPSDANE IPVSCYSNEH AGTINLSSSK STVDSNATNP  60
VSADHIFKRK RDNEQVCSWV LNDVAEKEGC SKKLRLSRDQ YALLEESFLK NTVPEPKQKQ  120
ALALQLNLRP RQVEVWFQNR RVRTKFEQTE VDCELLKRCN ESLAQQNRKL QKELEELRIL  180
EMSSPFRPAV TLTLCPSCKT VSAADNNSHF TLAKARSMFM RGAQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009388885.12e-50PREDICTED: homeobox-leucine zipper protein HAT4
SwissprotP466041e-46HAT22_ARATH; Homeobox-leucine zipper protein HAT22
TrEMBLA9NKN49e-66A9NKN4_PICSI; Uncharacterized protein
STRINGGorai.004G195900.14e-48(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37790.15e-42HD-ZIP family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Liu T,Longhurst AD,Talavera-Rauh F,Hokin SA,Barton MK
    The Arabidopsis transcription factor ABIG1 relays ABA signaled growth inhibition and drought induced senescence.
    Elife, 2017.
    [PMID:27697148]
  3. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]