PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00036701-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

NAC

Protein Properties

Length: 411aa MW: 47594.7 Da PI: 4.7174

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00036701-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	180.1	5.8e-56	6	133	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 lppGfrFhPtdeelv +yLk+kv+ k+el ++i+evd+yk+ePwdLp k + +++ ewyfFs+rd+ky++g+r+nrat++gyWkatgkd++ PSME_00036701-RA 6 LPPGFRFHPTDEELVAYYLKRKVHCWKIEL-DIIPEVDLYKCEPWDLPeKsFLPGRDMEWYFFSPRDRKYPNGSRTNRATEAGYWKATGKDRK 97 79**************************.99**********95334555888******************************* PP NAM 92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 v+s + +++g+kktLvfy+grap+g++tdWvmheyrl PSME_00036701-RA 98 VCS-HMRAIGMKKTLVFYRGRAPHGSRTDWVMHEYRL 133 .999***************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.96E-64	3	156	IPR003441	NAC domain
PROSITE profile	PS51005	61.079	6	156	IPR003441	NAC domain
Pfam	PF02365	1.8E-29	7	133	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 411 aa Download sequence Send to blast
MAPMSLPPGF RFHPTDEELV AYYLKRKVHC WKIELDIIPE VDLYKCEPWD LPEKSFLPGR 60 DMEWYFFSPR DRKYPNGSRT NRATEAGYWK ATGKDRKVCS HMRAIGMKKT LVFYRGRAPH 120 GSRTDWVMHE YRLDEKECEA SASLQDAYAL CRVFKKTGPG PRVGEQYGAP VENDFTCEMN 180 NFNNKSMLLS AQEQSQEIPS PVSEEEEQTN SRETSSEIIN DINVDDVASK GRLQLLHYDT 240 TSCSFPSFNE GRNHPKVDHN ENSFPPLEVD NFPNIKTCLS LSDSRMLSTY LLGQQFHSSV 300 EEAEILQQLY RDAKTSEENN YISQFINSDV EDVQNDEDSL QLDDLISGWN TEKDKQKAIN 360 SNRQEESGMI SLNSFVSQDN NNDNFFDSHP DQLLFFNRFL RQNSNPDRYQ I

Sequence ? help Back to Top

Protein Sequence Length: 411 aa Download sequence Send to blast

MAPMSLPPGF RFHPTDEELV AYYLKRKVHC WKIELDIIPE VDLYKCEPWD LPEKSFLPGR  60
DMEWYFFSPR DRKYPNGSRT NRATEAGYWK ATGKDRKVCS HMRAIGMKKT LVFYRGRAPH  120
GSRTDWVMHE YRLDEKECEA SASLQDAYAL CRVFKKTGPG PRVGEQYGAP VENDFTCEMN  180
NFNNKSMLLS AQEQSQEIPS PVSEEEEQTN SRETSSEIIN DINVDDVASK GRLQLLHYDT  240
TSCSFPSFNE GRNHPKVDHN ENSFPPLEVD NFPNIKTCLS LSDSRMLSTY LLGQQFHSSV  300
EEAEILQQLY RDAKTSEENN YISQFINSDV EDVQNDEDSL QLDDLISGWN TEKDKQKAIN  360
SNRQEESGMI SLNSFVSQDN NNDNFFDSHP DQLLFFNRFL RQNSNPDRYQ I

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-56	1	156	12	165	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-56	1	156	12	165	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-56	1	156	12	165	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-56	1	156	12	165	NO APICAL MERISTEM PROTEIN
3swm_A	2e-56	1	156	15	168	NAC domain-containing protein 19
3swm_B	2e-56	1	156	15	168	NAC domain-containing protein 19
3swm_C	2e-56	1	156	15	168	NAC domain-containing protein 19
3swm_D	2e-56	1	156	15	168	NAC domain-containing protein 19
3swp_A	2e-56	1	156	15	168	NAC domain-containing protein 19
3swp_B	2e-56	1	156	15	168	NAC domain-containing protein 19
3swp_C	2e-56	1	156	15	168	NAC domain-containing protein 19
3swp_D	2e-56	1	156	15	168	NAC domain-containing protein 19
4dul_A	2e-56	1	156	12	165	NAC domain-containing protein 19
4dul_B	2e-56	1	156	12	165	NAC domain-containing protein 19
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00212	DAP	Transfer from AT1G65910	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020529946.1	1e-113	uncharacterized protein LOC18445393
TrEMBL	U5CUT8	1e-111	U5CUT8_AMBTC; Uncharacterized protein
STRING	ERN17061	1e-112	(Amborella trichopoda)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G65910.1	1e-96	NAC domain containing protein 28