PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00036811-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

LBD

Protein Properties

Length: 195aa MW: 21719 Da PI: 8.8314

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00036811-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	145.7	1.3e-45	8	107	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +CaaCk+lrrkC+ +Cv+apyfp +qp+kfanvhk+FGasnv+kll++l++++reda++sl+yeA+ar++dPvyG+vg i+ lq+q++ql++e PSME_00036811-RA 8 PCAACKFLRRKCTLECVFAPYFPPDQPQKFANVHKIFGASNVTKLLNELHPHQREDAVNSLAYEADARVKDPVYGCVGAISILQHQVKQLQTE 100 7****************************************************************************************** PP DUF260 94 lallkee 100 l+++++e PSME_00036811-RA 101 LHHARSE 107 99987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	27.456	7	108	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.4E-44	8	105	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010199	Biological Process	organ boundary specification between lateral organs and the meristem

Sequence ? help Back to Top
Protein Sequence Length: 195 aa Download sequence Send to blast
MASSSNSPCA ACKFLRRKCT LECVFAPYFP PDQPQKFANV HKIFGASNVT KLLNELHPHQ 60 REDAVNSLAY EADARVKDPV YGCVGAISIL QHQVKQLQTE LHHARSELSK FINAGIAIPP 120 MGGGSGIGMG LAGSSRDQIF RDQNIMESHI SRDHLLRARE EGGIEFLRFT VHSCLRTPKF 180 KPALFFLIYI EMHGK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	3e-57	5	111	8	114	LOB family transfactor Ramosa2.1
5ly0_B	3e-57	5	111	8	114	LOB family transfactor Ramosa2.1
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Functional Description ? help Back to Top
Source	Description
UniProt	Not known; ectopic expression of LOB leads to alterations in the size and shape of leaves and floral organs and causes male and female sterility.
UniProt	Promotes the switch from proliferation to differentiation in the embryo sac. Negative regulator of cell proliferation in the adaxial side of leaves. Regulates the formation of a symmetric lamina and the establishment of venation. Interacts directly with RS2 (rough sheath 2) to repress some knox homeobox genes. {ECO:0000269\|PubMed:17209126}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00581	DAP	Transfer from AT5G63090	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Positively regulated within the shoot apex by both ASYMMETRIC LEAVES 1 (AS1) and ASYMMETRIC LEAVES 2 (AS2/LBD6) and by KNAT1. {ECO:0000269\|PubMed:11934861}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	-	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT119542	0.0	BT119542.1 Picea glauca clone GQ04106_O21 mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024356367.1	2e-70	protein LATERAL ORGAN BOUNDARIES-like isoform X1
Refseq	XP_024356368.1	2e-70	protein LATERAL ORGAN BOUNDARIES-like isoform X2
Refseq	XP_024356369.1	2e-70	protein LATERAL ORGAN BOUNDARIES-like isoform X2
Refseq	XP_024356370.1	2e-70	protein LATERAL ORGAN BOUNDARIES-like isoform X2
Refseq	XP_024356371.1	2e-70	protein LATERAL ORGAN BOUNDARIES-like isoform X2
Swissprot	Q32SG3	2e-57	LBD6_MAIZE; LOB domain-containing protein 6
Swissprot	Q9FML4	6e-58	LOB_ARATH; Protein LATERAL ORGAN BOUNDARIES
TrEMBL	A0A2K1IZ19	4e-69	A0A2K1IZ19_PHYPA; Uncharacterized protein
STRING	PP1S170_93V6.1	7e-70	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63090.4	1e-59	LBD family protein

Publications ? help Back to Top
Xu C, et al. Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration. Nat Plants, 2018. 4(2): p. 108-115 [PMID:29358751] Liu J, et al. The WOX11-LBD16 Pathway Promotes Pluripotency Acquisition in Callus Cells During De Novo Shoot Regeneration in Tissue Culture. Plant Cell Physiol., 2018. 59(4): p. 734-743 [PMID:29361138]