PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00037033-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

bHLH

Protein Properties

Length: 576aa MW: 63825.1 Da PI: 5.884

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00037033-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	22.6	1.9e-07	383	430	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i ++ L++l+P + +k a +L + ++Y++sLq PSME_00037033-RA 383 SHSLAERVRREKISARMKYLQDLVPGC----NKVTGRAVMLDEIINYVQSLQ 430 8***********************9....66799*************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	3.77E-8	377	434	No hit	No description
SuperFamily	SSF47459	1.31E-15	377	446	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	14.672	379	429	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.0E-15	379	445	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.6E-4	383	430	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.6E-8	385	435	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 576 aa Download sequence Send to blast
MENSFVCMDQ ITDSSHSAQH LLYSLQQPQE QQSEVTLLPN EHNNMNAMDM CMPDQQRTGP 60 NAQTQLNWPQ QQQFLRTNSN SEQMHGPFLS LLTSSQIDGI ITSEWQQLAE QNGHLLTVNP 120 EYAMNLSRSM SSQGSPLRQT LSRSMSSPNR PLNLHTDWSN LSNNTGSMCA VESEANARSA 180 LKAPACLGPF PSDPGFAERA AKFSSLNGKN WNARLLTSQT ASVGETEFLS DVARKETQVA 240 CSDDSESRKA FCRTASCPPT VENAAAETEK SSVVAEESAV SEKSSAGDAK TTNNNAVRKR 300 KSCRTSAQNH RMADSEESKE KRSKAVHLGA KEKEEAMAKT EQSNSDNSVD YSPKSARENP 360 KPLENQKQDY IHVRARRGQA TDSHSLAERV RREKISARMK YLQDLVPGCN KVTGRAVMLD 420 EIINYVQSLQ RQVEFLSMKL AAVNPSLEFN IDNFFAREMM MPIPPPGNVS SLEGMSSNLS 480 PYFHFQQMLQ QQQASLQAGA CSELDLPTQD TTTSLHKPGC AEMFGDAANF QGHVPSTWES 540 ELQNVFTMGL VQDRQPLFSS EGLPGHLEAN HMKMEM

Sequence ? help Back to Top

Protein Sequence Length: 576 aa Download sequence Send to blast

MENSFVCMDQ ITDSSHSAQH LLYSLQQPQE QQSEVTLLPN EHNNMNAMDM CMPDQQRTGP  60
NAQTQLNWPQ QQQFLRTNSN SEQMHGPFLS LLTSSQIDGI ITSEWQQLAE QNGHLLTVNP  120
EYAMNLSRSM SSQGSPLRQT LSRSMSSPNR PLNLHTDWSN LSNNTGSMCA VESEANARSA  180
LKAPACLGPF PSDPGFAERA AKFSSLNGKN WNARLLTSQT ASVGETEFLS DVARKETQVA  240
CSDDSESRKA FCRTASCPPT VENAAAETEK SSVVAEESAV SEKSSAGDAK TTNNNAVRKR  300
KSCRTSAQNH RMADSEESKE KRSKAVHLGA KEKEEAMAKT EQSNSDNSVD YSPKSARENP  360
KPLENQKQDY IHVRARRGQA TDSHSLAERV RREKISARMK YLQDLVPGCN KVTGRAVMLD  420
EIINYVQSLQ RQVEFLSMKL AAVNPSLEFN IDNFFAREMM MPIPPPGNVS SLEGMSSNLS  480
PYFHFQQMLQ QQQASLQAGA CSELDLPTQD TTTSLHKPGC AEMFGDAANF QGHVPSTWES  540
ELQNVFTMGL VQDRQPLFSS EGLPGHLEAN HMKMEM

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT104728	0.0	BT104728.1 Picea glauca clone GQ02814_B12 mRNA sequence.

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68920.2	1e-51	bHLH family protein