PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00037045-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

NAC

Protein Properties

Length: 60aa MW: 6936.02 Da PI: 4.6248

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00037045-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	28.2	5.2e-09	23	49	2	28
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkl 28 pGfrF Pt+eel+++yLkk++++ + PSME_00037045-RA 23 IPGFRFYPTEEELLSFYLKKRIQSGHQ 49 69********************98873 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	4.71E-9	14	49	IPR003441	NAC domain
PROSITE profile	PS51005	13.673	22	60	IPR003441	NAC domain
Pfam	PF02365	5.2E-6	24	47	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 60 aa Download sequence Send to blast
MAMAILEEIY NDAGAFKGEL TVIPGFRFYP TEEELLSFYL KKRIQSGHQL NFDIRPAIEI

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G61910.1	2e-10	NAC domain protein 66