PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00037120-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family LBD
Protein Properties Length: 238aa    MW: 26880.4 Da    PI: 8.4345
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00037120-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260131.63.1e-41101101101
            DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 
                       aCaaCk++rrkC+ +C+lapyfp +qpk+f n+hklFG+sn+l++lk++++++++dam+s++y+A+ar +dPv+G++g+i  lq ++e+l++e
  PSME_00037120-RA  10 ACAACKFQRRKCSVECPLAPYFPPDQPKQFLNAHKLFGVSNILRILKQVDDSKKSDAMKSMIYQANAREKDPVHGCFGIIIMLQTRIERLREE 102
                       7******************************************************************************************** PP

            DUF260  94 lallkeel 101
                       l+l+++++
  PSME_00037120-RA 103 LELVRSQI 110
                       ***99885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089125.699110IPR004883Lateral organ boundaries, LOB
PfamPF031956.4E-4010107IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MAGKGGTGQA CAACKFQRRK CSVECPLAPY FPPDQPKQFL NAHKLFGVSN ILRILKQVDD  60
SKKSDAMKSM IYQANAREKD PVHGCFGIII MLQTRIERLR EELELVRSQI MFLDQVYQSR  120
DYFNIPQKQQ QQQLQLQSLG NAGGHVSQQA LPASWIYPYV QQSPYAAYDG NGALYRQAYD  180
LRPNKLLVYN DHGQAYSDSK DAYESSAESS LKDSQSMEHV AERELKSAAA LFTLTNQN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A3e-3461117112LOB family transfactor Ramosa2.1
5ly0_B3e-3461117112LOB family transfactor Ramosa2.1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002511502.12e-58LOB domain-containing protein 27
TrEMBLB9R9274e-57B9R927_RICCO; LOB domain-containing protein, putative
STRINGXP_002511502.17e-58(Ricinus communis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47870.13e-37LOB domain-containing protein 27