PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00037224-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family WRKY
Protein Properties Length: 623aa    MW: 71307.8 Da    PI: 9.5966
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00037224-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY89.92e-28199256259
                       --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                       +Dgy+WrKYG+K  k+s++pr+YYrC+ ++C vkk ver+a+d+ +v++tY g+Hnhe
  PSME_00037224-RA 199 QDGYKWRKYGRKFLKNSPNPRNYYRCSDSNCDVKKTVERDAHDKGIVITTYLGNHNHE 256
                       8********************************************************8 PP
2WRKY90.61.2e-28409467159
                       ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                       ++Dgy+WrKYG+K  k+s++prsYYrC++++C vkk ver+a+d+ +v++tY g+Hnhe
  PSME_00037224-RA 409 MQDGYKWRKYGRKFLKKSPNPRSYYRCSYSNCDVKKTVERDAHDKGIVITTYLGTHNHE 467
                       58********************************************************8 PP
3WRKY89.52.7e-28530588159
                       ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                       ++Dgy+WrKYG+K  k++++prsYYrC+ ++C vkk ver+a+d+ +v++tY g+Hnhe
  PSME_00037224-RA 530 MQDGYKWRKYGRKFLKKNPNPRSYYRCSDSNCDVKKTVERDAHDKGIVITTYLGTHNHE 588
                       58********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.9E-30187258IPR003657WRKY domain
SuperFamilySSF1182906.28E-26190258IPR003657WRKY domain
PROSITE profilePS5081129.379193258IPR003657WRKY domain
SMARTSM007743.4E-30198257IPR003657WRKY domain
PfamPF031063.0E-22199256IPR003657WRKY domain
Gene3DG3DSA:2.20.25.804.6E-30397469IPR003657WRKY domain
SuperFamilySSF1182902.22E-26401469IPR003657WRKY domain
PROSITE profilePS5081128.851404469IPR003657WRKY domain
SMARTSM007742.9E-30409468IPR003657WRKY domain
PfamPF031069.7E-23410467IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.2E-29518590IPR003657WRKY domain
SuperFamilySSF1182901.02E-25522590IPR003657WRKY domain
PROSITE profilePS5081128.988525590IPR003657WRKY domain
SMARTSM007746.6E-29530589IPR003657WRKY domain
PfamPF031061.5E-22531588IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 623 aa     Download sequence    Send to blast
MVESTLHLPR RNRTEKSGLV KSIESQADLR SLNSFSFKSS QSIFTDAYAV SISSKDFVSF  60
WETAEVFAMA NFDPIIRHFQ DAIKGFSKGQ TQPLQKANCS QNRKGAEAFE ISDFLVFKED  120
ADDQSCNFKT GTPGPSIQRD YARSFPTNPP CIHLNHNSNV IQAHESPETI NPQEGSRKRK  180
AERGLKYAFL TRSETDILQD GYKWRKYGRK FLKNSPNPRN YYRCSDSNCD VKKTVERDAH  240
DKGIVITTYL GNHNHESPTV IYYIGRHEMH QAASASTPNH QLGNGAFFRN AIKGFSKEET  300
QPLKEANCSQ HMKGAEAFEI SDFLNVLEEE AGDQSFNFKT GTSGPSVQRD YARAFPSSAP  360
CIQGIHLDHN STVIQTQKPF ETINLKERSR KRKAELKYAF VTRSETDIMQ DGYKWRKYGR  420
KFLKKSPNPR SYYRCSYSNC DVKKTVERDA HDKGIVITTY LGTHNHESPT VIYYIERPEM  480
HQAASASTPN YELGNGVFLR SLNPKEGSRK RKAERTLKYA FVTRSETEIM QDGYKWRKYG  540
RKFLKKNPNP RSYYRCSDSN CDVKKTVERD AHDKGIVITT YLGTHNHESP TVIYYIERPE  600
MHQASASTPN FQLGMNGNFF QSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A6e-21191590774WRKY transcription factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0D6R4C94e-49A0A0D6R4C9_ARACU; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07100.22e-39WRKY DNA-binding protein 26