PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00037258-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family ERF
Protein Properties Length: 204aa    MW: 22985.5 Da    PI: 4.7533
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00037258-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP239.21.8e-122170255
               AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                      ++kGVr ++ +g+Wv eIr p++   r +++lg++ ta++Aa+a +aa  +l+g
  PSME_00037258-RA 21 QFKGVRLRE-WGKWVFEIRMPKS---REKIYLGSYKTAKQAARAFDAAVYCLRG 70
                      69******9.**********954...4*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.6E-252080IPR001471AP2/ERF domain
PROSITE profilePS5103219.0852178IPR001471AP2/ERF domain
CDDcd000182.03E-222180No hitNo description
SuperFamilySSF541711.24E-162180IPR016177DNA-binding domain
SMARTSM003801.4E-232184IPR001471AP2/ERF domain
PRINTSPR003672.6E-92233IPR001471AP2/ERF domain
PRINTSPR003672.6E-96080IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MAKAPSQEDL PNEDHRQTCR QFKGVRLREW GKWVFEIRMP KSREKIYLGS YKTAKQAARA  60
FDAAVYCLRG SKAEFNFPDS VPAIPSASES PLSRQQIQLA ATKYALNEVP STSHSLHDNV  120
DNNSKNEPSL SSSSASKMSS ANEQQMSEDL EFWFAGSYGT KKLNLEKIPS IDEVWALEFI  180
PTSQEEEEAD ISVDPTALWN FEDV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLD5ADJ92e-62D5ADJ9_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19210.16e-32ERF family protein