PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00037288-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family ARF
Protein Properties Length: 134aa    MW: 14938.2 Da    PI: 10.902
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00037288-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3352.6e-114465599
                      ETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                B3 55 ksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                      +++r++lt+GW+ Fv+a+++ +gD+v+F   ++++++l+++++r+
  PSME_00037288-RA  4 QPKRHLLTTGWSVFVSAKRVVAGDSVLFI--RNESGQLLLGIRRA 46
                      6789*************************..669999*****997 PP
2Auxin_resp80.34.7e-2771130159
        Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrl 59 
                       aaha++t+s F+v+YnPras+seFv++++k+eka++ ++vs+GmRf+m fetedss rr+
  PSME_00037288-RA  71 AAHATATNSRFTVFYNPRASPSEFVIPLAKYEKAIYhTRVSAGMRFRMLFETEDSSVRRY 130
                       79*********************************9789*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086310.193147IPR003340B3 DNA binding domain
PfamPF023629.7E-9346IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.7E-14359IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.16E-13474IPR015300DNA-binding pseudobarrel domain
PfamPF065077.1E-2271130IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 134 aa     Download sequence    Send to blast
MSSQPKRHLL TTGWSVFVSA KRVVAGDSVL FIRNESGQLL LGIRRANRSQ TIMPSLVLSS  60
DSMHIGVLAA AAHATATNSR FTVFYNPRAS PSEFVIPLAK YEKAIYHTRV SAGMRFRMLF  120
ETEDSSVRRY CSEP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A6e-564130217343Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016182562.18e-68auxin response factor 8, partial
RefseqXP_017429851.12e-67PREDICTED: auxin response factor 6-like isoform X4
RefseqXP_024373333.15e-71LOW QUALITY PROTEIN: auxin response factor 6-like
SwissprotA2X1A16e-68ARFF_ORYSI; Auxin response factor 6
SwissprotQ6H6V46e-68ARFF_ORYSJ; Auxin response factor 6
TrEMBLA0A2I0L9E32e-70A0A2I0L9E3_PUNGR; Auxin response factor
TrEMBLA0A453NFE61e-69A0A453NFE6_AEGTS; Auxin response factor
STRINGPP1S86_4V6.15e-70(Physcomitrella patens)
STRINGMLOC_66152.23e-69(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.24e-67auxin response factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]