PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00037322-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB_related
Protein Properties Length: 246aa    MW: 27803.4 Da    PI: 10.0921
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00037322-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.11.3e-151963248
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      g+ +++E+el+++++ +lG++ W++Ia +++ +Rt++++k++w+++l
  PSME_00037322-RA 19 GNISADEEELIIRLHSLLGNR-WSLIAGRLP-KRTDNEIKNYWNTHL 63
                      67799****************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.3E-8324IPR009057Homeodomain-like
SuperFamilySSF466892.72E-18373IPR009057Homeodomain-like
PROSITE profilePS5129425.0941367IPR017930Myb domain
SMARTSM007174.8E-151765IPR001005SANT/Myb domain
PfamPF002494.5E-141963IPR001005SANT/Myb domain
CDDcd001675.15E-122263No hitNo description
Gene3DG3DSA:1.10.10.604.3E-212563IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MMSCRLRWLN YLRPDIKHGN ISADEEELII RLHSLLGNRW SLIAGRLPKR TDNEIKNYWN  60
THLSKKLLLM NQSSTTATNL KRRSKSPSIV QNHVLNTGPV KKNTVVTQSQ MVRSNSFNVY  120
GCSNHDSHEG FKSCNVKEMM NSSKLFFDLI AGTDLITNND SQPIESKESR NSTASMSRDS  180
DSCGGDGTSL AKSLVNLNEL STPDCNLLSY PSSFAQTLGY KSSTWNRLRW LQRQFLNSIS  240
IVTHKT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-1536744108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_026452705.18e-38transcription factor MYB8-like
TrEMBLA0A167V9112e-68A0A167V911_PICAB; Transcription factor MYB31
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22640.15e-39myb domain protein 3