PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00037370-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

VOZ

Protein Properties

Length: 276aa MW: 30413.1 Da PI: 4.3296

Description

VOZ family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00037370-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	VOZ	137.5	1e-42	185	271	2	88
VOZ 2 ppsaflgpkcalwdctrpaqgsewlqdycssfhatlalneglpgttpvlrpkgidlkdgllfaalsakvqgkevgipecegaataks 88 pp aflgpkcalwdc+rp+qgs+w+qdycs+fh ++alneg+pg++pvlrp+gi lkdgllfaal ak+ k+ gipecega+t+k PSME_00037370-RA 185 PPEAFLGPKCALWDCPRPTQGSNWCQDYCSNFHGMVALNEGPPGMRPVLRPGGIYLKDGLLFAALGAKTVVKSFGIPECEGATTTKI 271 799*********************************************************************************996 PP

Sequence ? help Back to Top
Protein Sequence Length: 276 aa Download sequence Send to blast
MFTDLQQVRK ESRVNGALVL EERVHQLPHE CKAKLHEESP TTSMLEASLC SSNLSCDMWH 60 LLQLHEEEDD ATSILAAPYS SKIQLNENTL EAANPSSFQE AIPPNEMRND FYVDHANAEA 120 QNIDGTSRSE NIHTESLLQT TNEGLEAVAQ MNQDFDNNLC LSLDPEVEEE HIPKFQGPCP 180 GISLPPEAFL GPKCALWDCP RPTQGSNWCQ DYCSNFHGMV ALNEGPPGMR PVLRPGGIYL 240 KDGLLFAALG AKTVVKSFGI PECEGATTTK ITLECT

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011626288.1	1e-74	transcription factor VOZ1
Refseq	XP_011626289.1	1e-74	transcription factor VOZ1
TrEMBL	W1Q0P1	3e-73	W1Q0P1_AMBTC; Uncharacterized protein
STRING	ERN14021	4e-74	(Amborella trichopoda)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28520.2	2e-65	vascular plant one zinc finger protein