PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00037448-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

bHLH

Protein Properties

Length: 353aa MW: 38036.7 Da PI: 9.537

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00037448-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	36.2	1.1e-11	198	243	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+++Er+RR+ri +++ L+el+P + K +Ka++L + ++Y+k Lq PSME_00037448-RA 198 HSIAERQRRERIAERMKALQELVPIC-----NKIDKAAMLDEIIDYVKFLQ 243 99*********************8.....6****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	4.45E-17	191	252	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	17.047	193	242	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	8.2E-17	195	252	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.13E-12	197	247	No hit	No description
Pfam	PF00010	4.1E-9	198	243	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.9E-13	199	248	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 353 aa Download sequence Send to blast
MLCNNKKPFT KSLMGSSQGM MTGILEDPFL ASRIQQQLSN ENLLGPCERK RSMALQLGTT 60 GGMQAFRSTG GPGLLAVIRS PLSGSAVAAD TITIQSPTQS LWPPYVGLDP LSLGQGRVDT 120 AWLLGKRLRD DQARPTNTGL FTNFGVAVGS NNEQAGQQST YELALAHPQP QSLSPPGAVV 180 APARPRVRAR RGQATDPHSI AERQRRERIA ERMKALQELV PICNKIDKAA MLDEIIDYVK 240 FLQLQVKVLS MSRLGGAGAG GPLVADISAD ASNSMRISRI KKVHENICSD DEGLSITEEE 300 VAKRMDENMG SVMQYLQTKG LCLIPLLIAM TISGRSTMQP NSLVRSPSPC ASN

Sequence ? help Back to Top

Protein Sequence Length: 353 aa Download sequence Send to blast

MLCNNKKPFT KSLMGSSQGM MTGILEDPFL ASRIQQQLSN ENLLGPCERK RSMALQLGTT  60
GGMQAFRSTG GPGLLAVIRS PLSGSAVAAD TITIQSPTQS LWPPYVGLDP LSLGQGRVDT  120
AWLLGKRLRD DQARPTNTGL FTNFGVAVGS NNEQAGQQST YELALAHPQP QSLSPPGAVV  180
APARPRVRAR RGQATDPHSI AERQRRERIA ERMKALQELV PICNKIDKAA MLDEIIDYVK  240
FLQLQVKVLS MSRLGGAGAG GPLVADISAD ASNSMRISRI KKVHENICSD DEGLSITEEE  300
VAKRMDENMG SVMQYLQTKG LCLIPLLIAM TISGRSTMQP NSLVRSPSPC ASN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	202	207	RQRRER

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by heat treatment. {ECO:0000269\|PubMed:12679534}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002325140.2	6e-63	transcription factor bHLH66
Swissprot	Q9LSQ3	6e-59	BH082_ARATH; Transcription factor bHLH82
TrEMBL	A0A3S3QVD6	6e-65	A0A3S3QVD6_9MAGN; Transcription factor bHLH66
STRING	POPTR_0018s11800.1	2e-62	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G30980.1	4e-39	LJRHL1-like 2

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Tam TH,Catarino B,Dolan L Conserved regulatory mechanism controls the development of cells with rooting functions in land plants. Proc. Natl. Acad. Sci. U.S.A., 2015. 112(29): p. E3959-68 [PMID:26150509] Zhang J, et al. Sperm cells are passive cargo of the pollen tube in plant fertilization. Nat Plants, 2017. 3: p. 17079 [PMID:28585562]