PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00037459-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family ERF
Protein Properties Length: 245aa    MW: 27206.1 Da    PI: 4.9103
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00037459-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.22.3e-194594255
               AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                      gy+GVr ++ +g+Wv+eIr+p++   + r++lg+f t+e+Aa+a++ a+++++g
  PSME_00037459-RA 45 GYRGVRMRS-WGKWVSEIREPKK---KSRIWLGTFHTPEMAARAHDVAALSIKG 94
                      8*****998.**********854...6***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.54E-3044104No hitNo description
SuperFamilySSF541712.55E-2145103IPR016177DNA-binding domain
PROSITE profilePS5103222.85345102IPR001471AP2/ERF domain
PfamPF008475.4E-124594IPR001471AP2/ERF domain
SMARTSM003808.7E-3745108IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.8E-3146103IPR001471AP2/ERF domain
PRINTSPR003673.1E-104657IPR001471AP2/ERF domain
PRINTSPR003673.1E-106884IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MQNTSRKRRA AESNNGEDSA EEKSAVSNGD KQREVRVKGK RHPAGYRGVR MRSWGKWVSE  60
IREPKKKSRI WLGTFHTPEM AARAHDVAAL SIKGNSAFLN FPHLAYSLPR PATLSSSDIQ  120
KAAAASAADF HLPSEEDHNE DRSLDAAGTN TYADTVLMPA ESTVNEDCAS NSAWISSFLL  180
ENESMIIDDE ILFDLPNFFG NMAEGLLVAP PWMLQPAELY GNTPAIDRFY DENGSSYAET  240
SIWDY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-17461031573Ethylene-responsive transcription factor ERF096
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027335334.17e-47ethylene-responsive transcription factor ERF034
TrEMBLB8LM171e-115B8LM17_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.11e-42ERF family protein