PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00037487-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family bHLH
Protein Properties Length: 257aa    MW: 27856.6 Da    PI: 6.7919
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00037487-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.91.8e-08158187732
                       HHHHHHHHHHHHHHHHHHCTSCCC...... CS
               HLH   7 erErrRRdriNsafeeLrellPkas....k 32 
                       ++ErrRR+++N++++ Lr+++Pk s    +
  PSME_00037487-RA 158 MAERRRRKKVNDRLFMLRSVVPKVSkvevN 187
                       79*********************5435553 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474598.37E-7146184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS508888.543151206IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.6E-6157187IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.24E-6158186No hitNo description
Gene3DG3DSA:4.10.280.103.3E-6158186IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MEMAWTGPLL DESFSSFRAI LNGGGEYDFY STMDANEMAL EALLGSSLMC PDGSVLSNVH  60
TETIDAFHHM DCSITTIVEM LEHPNQGSDE MGLLQRRAEI ESGFHKNEGS HKLNGMVGGS  120
RGNASHAANN NNNDGYASAA SVGRGRGRKT GLPAKNLMAE RRRRKKVNDR LFMLRSVVPK  180
VSKVEVNTRE GKALNIHMFC SKKSGMLLST ISALDGVGLD VKQAVISCFN GFALEVLQAE  240
QPNGNATAEE IKALLLH
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021673396.14e-49transcription factor ICE1-like isoform X2
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12860.11e-25bHLH family protein