PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00037500-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB
Protein Properties Length: 242aa    MW: 27496.3 Da    PI: 8.1792
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00037500-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.19.7e-142471148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      +g WT++Ed +l+  ++ +G g W++ ++  g+ R++k+c++rw +yl
  PSME_00037500-RA 24 KGVWTKQEDGRLIAHIQAHGEGAWRSLPKAAGLLRCGKSCRLRWINYL 71
                      799*****************************99************97 PP
2Myb_DNA-binding58.51.5e-1877121147
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       rg++++eEdel+++++ +lG++ W++Iar++  gRt++++k++w+++
  PSME_00037500-RA  77 RGNFSEEEDELIIKLHSLLGNK-WSLIARRLS-GRTDNEIKNYWNTH 121
                       89********************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.2E-221574IPR009057Homeodomain-like
PROSITE profilePS5129413.3841971IPR017930Myb domain
SuperFamilySSF466893.56E-2822118IPR009057Homeodomain-like
SMARTSM007171.2E-92373IPR001005SANT/Myb domain
PfamPF002499.8E-122471IPR001005SANT/Myb domain
CDDcd001672.38E-72771No hitNo description
PROSITE profilePS5129428.77572126IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.2E-2775126IPR009057Homeodomain-like
SMARTSM007171.4E-1776124IPR001005SANT/Myb domain
PfamPF002492.3E-1677121IPR001005SANT/Myb domain
CDDcd001673.58E-1379122No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MNSACLFAVK IMRSPCCERA HINKGVWTKQ EDGRLIAHIQ AHGEGAWRSL PKAAGLLRCG  60
KSCRLRWINY LRPDLKRGNF SEEEDELIIK LHSLLGNKWS LIARRLSGRT DNEIKNYWNT  120
HIKRKLLSRG IDPQTHHPLC ARHNSNTILT FPPIPDHEIP AFQTRRAAEI ADFFPHDVSE  180
SSPIVPAVSE DQENSDLNLD LCISLPYNSC HAERRASSVD RNIDELSCAH NIGPQINFLQ  240
VL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C5e-292212625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1012541e-115BT101254.1 Picea glauca clone GQ0082_F08 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008783376.11e-86myb-related protein 308-like
SwissprotP813934e-80MYB08_ANTMA; Myb-related protein 308
TrEMBLA0A3G6JFH71e-111A0A3G6JFH7_PINTA; Myb-related protein 4
STRINGXP_008783376.15e-86(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38620.11e-81myb domain protein 4
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]