PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00037531-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family ERF
Protein Properties Length: 455aa    MW: 51863.1 Da    PI: 6.3277
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00037531-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.44.9e-20124173255
               AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                       +y+GVr+++ +g+W+AeIrdp+    + +r++lg+f+tae+Aa+a+++a +k++g
  PSME_00037531-RA 124 RYRGVRQRP-WGKWAAEIRDPK----KvARVWLGTFDTAEDAARAYDNASLKFRG 173
                       7********.**********83....57************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103225.225124181IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.3E-32124182IPR001471AP2/ERF domain
CDDcd000184.26E-35124182No hitNo description
SMARTSM003806.8E-36124187IPR001471AP2/ERF domain
SuperFamilySSF541715.17E-22124182IPR016177DNA-binding domain
PfamPF008476.0E-13124173IPR001471AP2/ERF domain
PRINTSPR003677.7E-12125136IPR001471AP2/ERF domain
PRINTSPR003677.7E-12147163IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 455 aa     Download sequence    Send to blast
MQPDIANEEK NMSEDNFVEN SEDTLAMISA LSRVVCGYKL NPMDGKTDQL VAGKKRRRDE  60
QQTITSTAPC VKEDDISGQP FRSYQEVSSI VTPLHHQQRI QEDDMSSNKK NELPETQNSG  120
KKRRYRGVRQ RPWGKWAAEI RDPKKVARVW LGTFDTAEDA ARAYDNASLK FRGARAKLNF  180
PERINLPDED HLGMNIAKQE SDAITDFSRQ ISHATSKAGL PTYRNNLSAP THTPYPNGVH  240
HGNPAQHFIP TDSTRLSQVS DLYRYAQLVQ NQGFDADQAN SYPTLLEHYS RLSQVSDLYR  300
YAQLVQNQGF DADQANSYPT LLEHYSAYMK YQQQTEANNR QLASITPIQN QPGLNYIRQV  360
QITGRPNLAS TNYTGTTLPM YNNYVQQQQQ EHMLIHQQQP SNSTTGYDSE LYNLDLDQTS  420
RRLLASTVES QSNSYDDSDY NQVLLTGQNW HIPDL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-26120185167ATERF1
3gcc_A5e-26120185167ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA9P2881e-168A9P288_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61890.18e-34ERF family protein