PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00037572-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

WRKY

Protein Properties

Length: 224aa MW: 24825.5 Da PI: 9.5061

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00037572-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	92.5	3.2e-29	124	182	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYG K k+ ++prsYY+Ct ++C++kkkver+a+dp ++++tYeg Hnhe PSME_00037572-RA 124 LDDGYKWRKYGTKRLKSRPHPRSYYKCTESSCSMKKKVEREATDPGLLITTYEGLHNHE 182 59********************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	2.3E-30	113	184	IPR003657	WRKY domain
SuperFamily	SSF118290	8.89E-26	117	184	IPR003657	WRKY domain
PROSITE profile	PS50811	29.344	119	184	IPR003657	WRKY domain
SMART	SM00774	9.3E-29	124	183	IPR003657	WRKY domain
Pfam	PF03106	2.3E-23	125	182	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 224 aa Download sequence Send to blast
MNSLFCSNPV TAKTFNATFS QEPHVYLHDI PGPKIWTDAW SAHEFVTDKF EDCGMPANEL 60 KILGAMACNS PAPQSFPSPE EQLSANMAKA EQIANGASSK RKKIIKGKKG PIRVFKTRSE 120 SNILDDGYKW RKYGTKRLKS RPHPRSYYKC TESSCSMKKK VEREATDPGL LITTYEGLHN 180 HECPSVIYYI GKPIILPQQP GSKPGIVLVN SGICSEAGVK FASQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	4e-26	115	185	8	78	Probable WRKY transcription factor 4
2lex_A	4e-26	115	185	8	78	Probable WRKY transcription factor 4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G64000.1	2e-29	WRKY DNA-binding protein 56