PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00037573-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family WRKY
Protein Properties Length: 92aa    MW: 10342.9 Da    PI: 7.9575
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00037573-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY53.45.2e-1713502259
                      EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY 22 rsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59
                      rsYYrC+ ++C++kkkver+a+dp ++++tY g+Hnhe
  PSME_00037573-RA 13 RSYYRCSESNCSMKKKVERDASDPGLLVTTYDGTHNHE 50
                      9************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1182904.58E-131051IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.1E-141251IPR003657WRKY domain
SMARTSM007741.4E-71351IPR003657WRKY domain
PfamPF031064.7E-121350IPR003657WRKY domain
PROSITE profilePS5081115.5831352IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 92 aa     Download sequence    Send to blast
MNLTPVYCHY LFRSYYRCSE SNCSMKKKVE RDASDPGLLV TTYDGTHNHE SHSVIYYIWK  60
PIILPEPPGL KPAIVPVNAG PVCSETGIKL SN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0D6RB888e-26A0A0D6RB88_ARACU; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64810.14e-15WRKY DNA-binding protein 51