PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00037622-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family HD-ZIP
Protein Properties Length: 439aa    MW: 48865.8 Da    PI: 8.3701
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00037622-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox49.95.4e-16307358556
                       SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
          Homeobox   5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                        +++++q   Lee F kn++p ++e++ LA +l++  r V vWFqNr a+ k
  PSME_00037622-RA 307 LRLSRKQCALLEESFLKNSTPEHNEKQALALQLNIRPRHVEVWFQNRQARTK 358
                       56899*********************************************98 PP
2HD-ZIP_I/II94.89.3e-31305392289
       HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 
                       kk+rls++q +lLEesF ++++ e+++K++la +L+++pr v+vWFqnr ARtk+kq+++dye Lkr+ ++l+e+n++L+ke e+Lr+
  PSME_00037622-RA 305 KKLRLSRKQCALLEESFLKNSTPEHNEKQALALQLNIRPRHVEVWFQNRQARTKLKQTDVDYELLKRCNESLAEDNRKLHKELEHLRA 392
                       9*************************************************************************************94 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM001981.8E-533142IPR014044CAP domain
Gene3DG3DSA:3.40.33.101.4E-133394IPR014044CAP domain
SuperFamilySSF557973.92E-153394IPR014044CAP domain
PfamPF001882.3E-44295IPR014044CAP domain
PROSITE profilePS5007114.398300360IPR001356Homeobox domain
SMARTSM003891.6E-10302364IPR001356Homeobox domain
CDDcd000863.99E-11305361No hitNo description
Gene3DG3DSA:1.10.10.604.2E-14305358IPR009057Homeodomain-like
SuperFamilySSF466892.52E-14305368IPR009057Homeodomain-like
PfamPF000462.1E-13307358IPR001356Homeobox domain
PROSITE patternPS000270335358IPR017970Homeobox, conserved site
SMARTSM003401.5E-16360403IPR003106Leucine zipper, homeobox-associated
PfamPF021831.7E-6360394IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 439 aa     Download sequence    Send to blast
MSQPSCLLVV VAVVSAAIYD QLQIVAASAN ISETIERFLV PQNEARKQVG VPPLKWDVKL  60
TNYARSYARE RRADCLLQHS DGPFGENIFW GSGRELCLAE VPFSTPRLTD LFKEIESEAL  120
LLAVSPLLVS FLIARPFSNF PEAFRSPLAG LLCSKETRGF DAFDALDVAF DVDFRNEGLV  180
RTVPMAFNGI MAHYLPLPVC GFHCPVPNGS RSCNERSAGK ANVTIHGVPV SRLSDANKFH  240
ASCYSNEEAG TINVSPSNST VESNATNRVN GYAMFKRKRG GTEELENERA WSRPLSDLVE  300
EVCGKKLRLS RKQCALLEES FLKNSTPEHN EKQALALQLN IRPRHVEVWF QNRQARTKLK  360
QTDVDYELLK RCNESLAEDN RKLHKELEHL RAMKLSPPLS PPGTLIICPS CERVSAANKS  420
SNFNLAKAQS MFKRGAFGP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17460.15e-42Homeobox-leucine zipper protein 4 (HB-4) / HD-ZIP protein