PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00037661-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family ERF
Protein Properties Length: 360aa    MW: 39537.1 Da    PI: 6.0049
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00037661-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.43.1e-17155205255
               AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                       +y+GVr ++ +g+++AeIrd +    +  r++lg+f t eeAa a+++a+ +++g
  PSME_00037661-RA 155 HYRGVRKRP-WGKYAAEIRDSTR---HgIRVWLGTFETGEEAAMAYDQAAFSMRG 205
                       7********.**********422...25*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.4E-30154214IPR001471AP2/ERF domain
CDDcd000183.94E-28155213No hitNo description
PROSITE profilePS5103222.945155213IPR001471AP2/ERF domain
SMARTSM003804.7E-36155219IPR001471AP2/ERF domain
PfamPF008472.2E-13155205IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-22155215IPR016177DNA-binding domain
PRINTSPR003672.9E-10156167IPR001471AP2/ERF domain
PRINTSPR003672.9E-10179195IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MASTFTFSSC MSCTENSSIC DYRSPCNNCK TMAWDLQSSG SVCNAAQNYS ANYHISSADP  60
SLISCFSEEL KSFPLDENDS EDMVLYGVLK EAISHGWEPE LTTTPASSSS TRIMMSSTSC  120
QQKKWQSGAA ERKPVQRSKP AKKLEAKVSG GTERHYRGVR KRPWGKYAAE IRDSTRHGIR  180
VWLGTFETGE EAAMAYDQAA FSMRGSNAIL NFPLEVVCSS FKRRQVLPAS SVKFSGGSSE  240
ISSGVTSSST QLSDGHSRIQ PLDEYHSSTA TSAPERPAAI RLDSCRKRRR LAPSPADKLM  300
TNTSDESQNV DKSSGVLLLA EPKREETQSI LELEALGVEY LEELLLFSQE DVAAVSVFEF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-29154216163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1285289RKRRR
2286290KRRRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17500.18e-45ethylene responsive element binding factor 1