PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00037755-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family HSF
Protein Properties Length: 226aa    MW: 25683.1 Da    PI: 9.3361
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00037755-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind110.21.5e-34191112103
                       HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXX CS
      HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkell 94 
                       Fl k+y++++d+++++++sw +n+n+fvv++++ef+ +vLp+yF h+n++SFvRQLn+YgF+k+ + +          eF+++ F kg+k+ll
  PSME_00037755-RA  19 FLVKTYRLVDDPSTDHIVSWGDNNNTFVVWKSKEFSASVLPSYFNHTNVSSFVRQLNTYGFRKIVRGR---------CEFANELFMKGQKHLL 102
                       9***************************************************************9988.........67************** PP

                       XXXXXXXXX CS
      HSF_DNA-bind  95 ekikrkkse 103
                       ++i+r+k +
  PSME_00037755-RA 103 SHIQRRKPS 111
                       ******975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004155.3E-5115108IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.105.7E-3617108IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.29E-3217108IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000563.9E-181942IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.2E-2919108IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.9E-185769IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.9E-187082IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MGGSEPVLRD AGRLVAAPFL VKTYRLVDDP STDHIVSWGD NNNTFVVWKS KEFSASVLPS  60
YFNHTNVSSF VRQLNTYGFR KIVRGRCEFA NELFMKGQKH LLSHIQRRKP STFTVQKEYD  120
KYSLFQPISP TQHSDDSAAV PSVSHENETL KRNNSLLLSE IARLENTLKR DVTLFIRQNL  180
RVSPLINLDT NIDNPSPSSS MTDVAEEIRA EEIRVSPPKL FGVPLY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-231910829129Heat shock factor protein 1
5d5v_B2e-231910829129Heat shock factor protein 1
5d5v_D2e-231910829129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ0633765e-47FJ063376.1 Pinus taeda isolate 4944 anonymous locus 0_17860_02 genomic sequence.
GenBankFJ0633785e-47FJ063378.1 Pinus taeda isolate 4943 anonymous locus 0_17860_02 genomic sequence.
GenBankFJ0633795e-47FJ063379.1 Pinus taeda isolate 4957 anonymous locus 0_17860_02 genomic sequence.
GenBankFJ0633805e-47FJ063380.1 Pinus taeda isolate 4954 anonymous locus 0_17860_02 genomic sequence.
GenBankFJ0633815e-47FJ063381.1 Pinus taeda isolate 4958 anonymous locus 0_17860_02 genomic sequence.
GenBankFJ0633825e-47FJ063382.1 Pinus taeda isolate 4952 anonymous locus 0_17860_02 genomic sequence.
GenBankFJ0633855e-47FJ063385.1 Pinus taeda isolate 4950 anonymous locus 0_17860_02 genomic sequence.
GenBankFJ0633885e-47FJ063388.1 Pinus taeda isolate 4948 anonymous locus 0_17860_02 genomic sequence.
GenBankFJ0633895e-47FJ063389.1 Pinus taeda isolate 4951 anonymous locus 0_17860_02 genomic sequence.
GenBankFJ0633905e-47FJ063390.1 Pinus taeda isolate 4959 anonymous locus 0_17860_02 genomic sequence.
GenBankFJ0633915e-47FJ063391.1 Pinus taeda isolate 4949 anonymous locus 0_17860_02 genomic sequence.
GenBankFJ0633925e-47FJ063392.1 Pinus taeda isolate 4942 anonymous locus 0_17860_02 genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotQ9C6358e-50HSFB4_ARATH; Heat stress transcription factor B-4
TrEMBLH9WUJ65e-82H9WUJ6_PINTA; Uncharacterized protein (Fragment)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.13e-52heat shock transcription factor B4