PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00037800-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family GRAS
Protein Properties Length: 170aa    MW: 19011.5 Da    PI: 6.8871
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00037800-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS25.61.4e-0847127226304
              GRAS 226 evLklvkslsPkvvvvveqe..adhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegae 304
                       + L+  ++lsP  v+++      ++n++ Fle f+++le   ++fds ea+l ++  +r++vEr + ++  +  v+  g+ 
  PSME_00037800-RA  47 NSLSGSRHLSPVAVTLATGPhgDERNRAAFLESFCRCLEELCTIFDSHEAGLLEQGLARAMVERIFSEPTMCRRVMSYGRV 127
                       5677889********9975431555****************************************9999999999988876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF035144.8E-647127IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 170 aa     Download sequence    Send to blast
MEALRSNGNY DGTDYLRITT IKWADNDDVC AILATPVEGC RNHSYYNSLS GSRHLSPVAV  60
TLATGPHGDE RNRAAFLESF CRCLEELCTI FDSHEAGLLE QGLARAMVER IFSEPTMCRR  120
VMSYGRVDTR QSNVVNLPLR AGYREGSISN NSMLYAKYTL VCSRVADLMK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0B4UEG57e-38A0A0B4UEG5_PINRA; SCL16 (Fragment)