PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00037950-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

NAC

Protein Properties

Length: 287aa MW: 32883.1 Da PI: 6.7216

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00037950-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	135.8	2.8e-42	20	146	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 pGfrF Pt+eelv +yLkk+v+g + l+++ +++++d+y+++PwdLp + + +e++w+fF++r+ k+ r++r t sgyWk+tg+d+++ PSME_00037950-RA 20 IPGFRFYPTEEELVGFYLKKRVQGGHqLNFDLIMPTLDLYRYDPWDLPgLANDVGERQWFFFVPREYKK--CARPTRLTVSGYWKTTGSDRAI 110 69*******************99945554459999*******555566999***97765..68**************** PP NAM 93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128 + + +glkktLvfykg+ap g++tdW+m+eyr+ PSME_00037950-RA 111 RNDLLQCIGLKKTLVFYKGKAPLGQRTDWIMNEYRM 146 99999***************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.44E-42	11	149	IPR003441	NAC domain
PROSITE profile	PS51005	46.027	19	162	IPR003441	NAC domain
Pfam	PF02365	7.6E-24	21	146	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 287 aa Download sequence Send to blast
MDTVEEMYSE GAVQAELPVI PGFRFYPTEE ELVGFYLKKR VQGGHQLNFD LIMPTLDLYR 60 YDPWDLPGLA NDVGERQWFF FVPREYKKCA RPTRLTVSGY WKTTGSDRAI RNDLLQCIGL 120 KKTLVFYKGK APLGQRTDWI MNEYRMPDLR SSSPKECKLA CADQEDGYGG MSDIYKGGFS 180 QVDGTTNQRD RIEKGKLVVS AGDEYEQKCH SINCQSNPTT EATVCRLHYN ENQNVVFYSN 240 VTKRDNVSKR DNEARQFENQ KGSVCSNVSK MSNQACQFEC LGPMMFC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	3e-36	15	155	13	153	NO APICAL MERISTEM PROTEIN
1ut4_B	3e-36	15	155	13	153	NO APICAL MERISTEM PROTEIN
1ut7_A	3e-36	15	155	13	153	NO APICAL MERISTEM PROTEIN
1ut7_B	3e-36	15	155	13	153	NO APICAL MERISTEM PROTEIN
4dul_A	3e-36	15	155	13	153	NAC domain-containing protein 19
4dul_B	3e-36	15	155	13	153	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that acts as a floral repressor. Controls flowering time by negatively regulating CONSTANS (CO) expression in a GIGANTEA (GI)-independent manner. Regulates the plant cold response by positive regulation of the cold response genes COR15A and KIN1. May coordinate cold response and flowering time. {ECO:0000269\|PubMed:17653269}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Circadian regulation with a peak of expression at dawn under continuous light conditions (PubMed:17653269). Circadian regulation with a peak of expression around dusk and lowest expression around dawn under continuous light conditions (at protein level) (PubMed:17653269). {ECO:0000269\|PubMed:17653269}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Swissprot	Q9ZVP8	2e-51	NAC35_ARATH; NAC domain-containing protein 35
TrEMBL	A0A075M5N5	2e-81	A0A075M5N5_9SPER; NAC domain protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02450.2	7e-54	NAC domain containing protein 35

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Okajima K Molecular mechanism of phototropin light signaling. J. Plant Res., 2016. 129(2): p. 149-57 [PMID:26815763] Nakasone Y,Ohshima M,Okajima K,Tokutomi S,Terazima M Photoreaction Dynamics of LOV1 and LOV2 of Phototropin from Chlamydomonas reinhardtii. J Phys Chem B, 2018. 122(6): p. 1801-1815 [PMID:29355019]