PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00038042-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family HD-ZIP
Protein Properties Length: 221aa    MW: 25071.5 Da    PI: 7.6962
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00038042-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox34.14.6e-1193137246
                       T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHH CS
          Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkv 46 
                       rk+ +++ +q  +Lee F++++++s ++r  LA+kl+L+ rqV v
  PSME_00038042-RA  93 RKKLRLSMHQSSILEESFREHSTLSPKQRSVLANKLNLQPRQVEV 137
                       788899*************************************86 PP
2HD-ZIP_I/II63.16.9e-2193173189
       HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 
                       +kk+rls +q+++LEesF+e+++L+p++++ la++L+lqprqv+v        tk+++ E++ e Lk +y++lkeen+rLe++v++Lr+
  PSME_00038042-RA  93 RKKLRLSMHQSSILEESFREHSTLSPKQRSVLANKLNLQPRQVEV--------TKLRRKEVERENLKGCYESLKEENRRLERKVQALRA 173
                       69******************************************9........8999999999************************94 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.6E-981137IPR009057Homeodomain-like
SuperFamilySSF466894.71E-982142IPR009057Homeodomain-like
PROSITE profilePS500719.4189149IPR001356Homeobox domain
SMARTSM003892.7E-491147IPR001356Homeobox domain
CDDcd000866.43E-892144No hitNo description
PfamPF000461.9E-893137IPR001356Homeobox domain
SMARTSM003403.9E-4141184IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MIQEERNTEL SLKLQSGEDS VSLINPCQGL SSRLSCRTLC EPSTTAYHNG RDMVSTPTGG  60
KEEFETSGHL VGVSCEFVKG DESDEIIQRG IPRKKLRLSM HQSSILEESF REHSTLSPKQ  120
RSVLANKLNL QPRQVEVTKL RRKEVERENL KGCYESLKEE NRRLERKVQA LRAMEIVEDE  180
NLCTRSPNSM PLVAATLTMC PSCELRAACR QDHHCHHRLV G
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024388906.13e-34homeobox-leucine zipper protein HAT4-like
SwissprotP466659e-31HAT14_ARATH; Homeobox-leucine zipper protein HAT14
TrEMBLA0A2K1JVM86e-33A0A2K1JVM8_PHYPA; Uncharacterized protein
TrEMBLQ9LS345e-33Q9LS34_PHYPA; Homeobox protein PpHB4
STRINGPP1S31_272V6.11e-33(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.14e-33homeobox from Arabidopsis thaliana