PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00038062-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family ERF
Protein Properties Length: 159aa    MW: 17739.6 Da    PI: 4.0379
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00038062-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP242.22e-132431054
               AP2 10 kkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54
                      +k+g+Wv+eIr p++   + r++lg+++t+e+Aa+a++ a  +l+
  PSME_00038062-RA  2 RKWGKWVSEIRMPNS---SGRIWLGSYDTPEKAARAYDFAVYYLR 43
                      46**********933...49******************8888877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.104.2E-23153IPR001471AP2/ERF domain
SMARTSM003803.0E-20158IPR001471AP2/ERF domain
CDDcd000186.06E-21154No hitNo description
PROSITE profilePS5103218.044152IPR001471AP2/ERF domain
SuperFamilySSF541712.55E-16254IPR016177DNA-binding domain
PfamPF008473.5E-7244IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 159 aa     Download sequence    Send to blast
MRKWGKWVSE IRMPNSSGRI WLGSYDTPEK AARAYDFAVY YLRASQAKFN FPHSLPEIAC  60
ASSLSPLQIQ AAAAKFAAEE YQLPSEKDVA SSSTYSEAES GMEGEERSVE QGLAFWDSVP  120
EDLDSCESIT LEDFPPLDLS MEDFGDIFQL SEDWGHGGF
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotQ9C5916e-31ERF16_ARATH; Ethylene-responsive transcription factor ERF016
TrEMBLB8LPP62e-74B8LPP6_PICSI; Uncharacterized protein
STRINGevm.model.supercontig_266.51e-32(Carica papaya)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G21960.12e-29ERF family protein