PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00038081-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

HD-ZIP

Protein Properties

Length: 211aa MW: 23890.2 Da PI: 9.6916

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00038081-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	41.3	2.6e-13	78	130	4	56
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 + + ++eq +ee F kn +p +e++ LA +l+++ rqV vW qNr a+ k PSME_00038081-RA 78 KLRVSREQGALMEESFVKNTTPAPKEKQALALQLNISPRQVEVWPQNRLARTK 130 557899******************************************88876 PP
2	HD-ZIP_I/II	94.1	1.5e-30	77	164	2	89
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 kk+r+s+eq +l+EesF ++++ p++K++la +L+++prqv+vW qnr ARtk+kq+E+d+e Lk++ ++l+een++L+ke ++Lr+ PSME_00038081-RA 77 KKLRVSREQGALMEESFVKNTTPAPKEKQALALQLNISPRQVEVWPQNRLARTKLKQTEVDCELLKSCNESLAEENRKLHKELQKLRA 164 9*************************************************************************************94 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	13.119	72	132	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.67E-12	76	140	IPR009057	Homeodomain-like
SMART	SM00389	3.3E-7	76	136	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	6.1E-12	77	130	IPR009057	Homeodomain-like
Pfam	PF00046	9.8E-11	78	130	IPR001356	Homeobox domain
CDD	cd00086	4.66E-9	82	133	No hit	No description
SMART	SM00340	4.7E-17	132	175	IPR003106	Leucine zipper, homeobox-associated
Pfam	PF02183	1.1E-8	132	166	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 211 aa Download sequence Send to blast
MLMAAAVGAR DQREKRRLQS IEYECHGYSN TTIGSNATNL ANGYAMFNRN RGGTEELENE 60 GGWSRPFRDL EEEGYSKKLR VSREQGALME ESFVKNTTPA PKEKQALALQ LNISPRQVEV 120 WPQNRLARTK LKQTEVDCEL LKSCNESLAE ENRKLHKELQ KLRAMKLESP LRPPGTLTMC 180 PSCKKVSPAN NSSHFTLAKV QSMFKRSDFG P

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006848871.1	2e-47	homeobox-leucine zipper protein HAT22
Refseq	XP_010919661.1	2e-47	homeobox-leucine zipper protein HAT4
Swissprot	P46604	5e-42	HAT22_ARATH; Homeobox-leucine zipper protein HAT22
TrEMBL	A9NKN4	5e-50	A9NKN4_PICSI; Uncharacterized protein
STRING	ERN10452	6e-47	(Amborella trichopoda)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37790.1	2e-44	HD-ZIP family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Liu T,Longhurst AD,Talavera-Rauh F,Hokin SA,Barton MK The Arabidopsis transcription factor ABIG1 relays ABA signaled growth inhibition and drought induced senescence. Elife, 2017. [PMID:27697148] Song L, et al. A transcription factor hierarchy defines an environmental stress response network. Science, 2017. [PMID:27811239]