PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00038113-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family ERF
Protein Properties Length: 221aa    MW: 24097.9 Da    PI: 6.7926
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00038113-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.21e-18134184255
               AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       +y+GVr+++ +g+++AeIrdp +  k +r++lg+f taeeAa a+++a+ k++g
  PSME_00038113-RA 134 HYRGVRRRP-WGKFAAEIRDPAK--KGARVWLGTFSTAEEAALAYDRAAFKIRG 184
                       7********.**********954..34*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.3E-31133192IPR001471AP2/ERF domain
PROSITE profilePS5103224.684134192IPR001471AP2/ERF domain
PfamPF008471.6E-13134184IPR001471AP2/ERF domain
CDDcd000183.51E-32134192No hitNo description
SMARTSM003802.8E-39134198IPR001471AP2/ERF domain
SuperFamilySSF541713.33E-23134193IPR016177DNA-binding domain
PRINTSPR003675.0E-11135146IPR001471AP2/ERF domain
PRINTSPR003675.0E-11158174IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MESNRALGDC YSQEVSPSLN IKMLELIRHH LLDVEDEIYI IDCQGENPPL SSLPVLAIDS  60
GDYIEATKAT SDSYQSNGSM LTLTEENEFT EAQGYTSSSS SVCTVLRRAE AFKVESQAHE  120
EKNGALKQIS GARHYRGVRR RPWGKFAAEI RDPAKKGARV WLGTFSTAEE AALAYDRAAF  180
KIRGSRALVN FPLALASSSE NGSDVGHMGH KRKRGNGGGG T
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A8e-34133197468ATERF1
3gcc_A8e-34133197468ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA9NMA34e-78A9NMA3_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47220.16e-27ethylene responsive element binding factor 2